2010001K21Rik Gene Detail

Summary

• Symbol
  2010001K21Rik
• Name
  RIKEN cDNA 2010001K21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1917079
  NCBI Gene: 69829
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:47124317-47169936 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 24.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1515 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917079	lncRNA gene	Chr13:47124317-47169936 (+)
129S1/SvImJ	ENSMUSG00200036029	lncRNA gene	Chr13:44392454-44423774 (+)
A/J	ENSMUSG00195031561	lncRNA gene	Chr13:43447500-43478835 (+)
AKR/J	ENSMUSG00220009916	lncRNA gene	Chr13:43252992-43284339 (+)
BALB/cJ	ENSMUSG00180008920	lncRNA gene	Chr13:43749916-43781243 (+)
C3H/HeJ	ENSMUSG00175029365	lncRNA gene	Chr13:43714057-43745399 (+)
C57BL/6NJ	ENSMUSG00215006264	lncRNA gene	Chr13:43877953-43909286 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0033999	pseudogene	Chr13:42261879-42262383 (+)
CAST/EiJ	ENSTCUG00005032302	lncRNA gene	Chr13:43780610-43810631 (+)
CBA/J	ENSMUSG00210028399	lncRNA gene	Chr13:43719567-43750907 (+)
DBA/2J	ENSMUSG00185034017	lncRNA gene	Chr13:44539657-44570991 (+)
FVB/NJ	ENSMUSG00205012056	lncRNA gene	Chr13:43499722-43531046 (+)
JF1/MsJ	ENSUMUG00000018780	lncRNA gene	Chr13:44052654-44087765 (+)
LP/J	ENSMUSG00230031085	lncRNA gene	Chr13:53855540-53886869 (+)
NOD/ShiLtJ	ENSMUSG00190012148	lncRNA gene	Chr13:43938286-43969623 (+)
NZO/HlLtJ	ENSMUSG00225036503	lncRNA gene	Chr13:47628872-47660173 (+)
PWK/PhJ	ENSLUMG00010021214	lncRNA gene	Chr13:42903491-42934825 (+)
SPRET/EiJ	ENSMSPG00010033132	lncRNA gene	Chr13:43010711-43045432 (+)
WSB/EiJ	ENSIUOG00005027568	lncRNA gene	Chr13:43091534-43122265 (+)

Homology

• Gene Tree
  2010001K21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 2010001K21Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39
• UniProt
  1

• Ensembl
  ENSMUSG00000051606 (Evidence)
• NCBI Gene
  69829

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000051606	Ensembl Gene Model | MGI Sequence Detail	45620	C57BL/6J
transcript	ENSMUST00000224451	Ensembl | MGI Sequence Detail	3192	Not Applicable
polypeptide	Q9CVI8	UniProt | EBI | MGI Sequence Detail	174	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 14

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573