Fam174c MGI Mouse Gene Detail - MGI:1917020 - family with sequence similarity 174, member C

Symbol

Fam174c
Name

family with sequence similarity 174, member C
Synonyms

1600002K03Rik

Feature Type

protein coding gene
IDs

MGI:1917020
NCBI Gene: 69770
Alliance

genome feature page
Transcription Start Sites

2 TSS

Sequence Map

Chr10:80008778-80010953 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 10, 39.72 cM, cytoband C1
Mapping Data

2 experiments

SNPs within 2kb

101 from dbSNP Build 142
Strain Annotations

19

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917020	protein coding gene	Chr10:80008778-80010980 (+)
129S1/SvImJ	ENSMUSG00200046313	protein coding gene	Chr10:76632461-76634663 (+)
A/J	ENSMUSG00195040775	protein coding gene	Chr10:77027998-77030200 (+)
AKR/J	ENSMUSG00220045900	protein coding gene	Chr10:76625556-76627758 (+)
BALB/cJ	ENSMUSG00180048735	protein coding gene	Chr10:77038494-77040696 (+)
C3H/HeJ	ENSMUSG00175052242	protein coding gene	Chr10:76909188-76911390 (+)
C57BL/6NJ	ENSMUSG00215048362	protein coding gene	Chr10:76650896-76653099 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0015569	protein coding gene	Chr10:74160509-74162867 (+)
CAST/EiJ	ENSTCUG00005049484	protein coding gene	Chr10:76536183-76538389 (+)
CBA/J	ENSMUSG00210038497	protein coding gene	Chr10:76765256-76767458 (+)
DBA/2J	ENSMUSG00185044773	protein coding gene	Chr10:77107639-77109841 (+)
FVB/NJ	ENSMUSG00205043257	protein coding gene	Chr10:76820434-76822637 (+)
JF1/MsJ	ENSUMUG00000041907	protein coding gene	Chr10:78338957-78341153 (+)
LP/J	ENSMUSG00230044307	protein coding gene	Chr10:78877374-78879576 (+)
NOD/ShiLtJ	ENSMUSG00190035719	protein coding gene	Chr10:77021373-77023576 (+)
NZO/HlLtJ	ENSMUSG00225048184	protein coding gene	Chr10:83163738-83165940 (+)
PWK/PhJ	ENSLUMG00010043354	protein coding gene	Chr10:76698632-76700835 (+)
SPRET/EiJ	ENSMSPG00010040297	protein coding gene	Chr10:78318219-78320398 (+)
WSB/EiJ	ENSIUOG00005050967	protein coding gene	Chr10:76725711-76727909 (+)

Human Ortholog

FAM174C, family with sequence similarity 174 member C

Vertebrate Orthologs

2

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

FAM174C, family with sequence similarity 174 member C
Synonyms

C19orf24
Links

HGNC:26073

NCBI Gene ID: 55009

UniProt: Q9BVV8
Chr Location

19p13.3; chr19:1275530-1279244 (+) GRCh38

MGI Vertebrate Homology

Fam174c stringent orthology
1 human;1 mouse;1 zebrafish
HCOP

vertebrate homology predictions: FAM174C
Gene Tree

Fam174c

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Phenotype Summary

11 phenotype references

All Mutations and Alleles

9
Chemically induced (other)

1
Endonuclease-mediated

1
Gene trapped

6
Targeted

1
Genomic Mutations

1 involving Fam174c
Find Mice (IMSR)

6 strains or lines available

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All GO Annotations

6
GO References

4

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

18

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase fam174c

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All Sequences

32
RefSeq

2
UniProt

1
CCDS

CCDS24012.1

Ensembl

ENSMUSG00000035595 (Evidence)
NCBI Gene

69770

			Length	Strain/Species	Flank
genomic	69770	NCBI Gene Model \| MGI Sequence Detail	2176	C57BL/6J	± kb
transcript	NM_027207	RefSeq \| MGI Sequence Detail	651	C57BL/6
polypeptide	Q9DAZ5	UniProt \| EBI \| MGI Sequence Detail	108	Not Applicable

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UniProt

1 Sequence
Protein Ontology

PR:000060057 protein FAM174C

(term hierarchy)
InterPro Domains

IPR009565 Membrane protein FAM174-like
GlyGen

Q9DAZ5 1 site

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All nucleic 18

cDNA 18

Microarray probesets 2

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MGI:6369076

Summaries

All 36

Gene Ontology 4

Phenotypes 11
Earliest

J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
Latest

J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Fam174c:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94517	Chr10:80007180-80007186 (+)	-1,595 bp
Tssr94518	Chr10:80008768-80008795 (+)	4 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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