2410022M11Rik Gene Detail

Summary

• Symbol
  2410022M11Rik
• Name
  RIKEN cDNA 2410022M11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1917005
  NCBI Gene: 100503842
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:57049446-57051356 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 28.56 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917005	lncRNA gene	Chr14:57049369-57051356 (+)
129S1/SvImJ	ENSMUSG00200044917	lncRNA gene	Chr14:45634246-45636156 (+)
A/J	ENSMUSG00195035333	lncRNA gene	Chr14:45849488-45851398 (+)
AKR/J	ENSMUSG00220033252	lncRNA gene	Chr14:45176268-45178178 (+)
BALB/cJ	ENSMUSG00180053108	lncRNA gene	Chr14:45471516-45473426 (+)
C3H/HeJ	ENSMUSG00175052507	lncRNA gene	Chr14:47176825-47178735 (+)
C57BL/6NJ	ENSMUSG00215049765	lncRNA gene	Chr14:45368368-45370278 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049938	lncRNA gene	Chr14:47147370-47149270 (+)
CBA/J	ENSMUSG00210048593	lncRNA gene	Chr14:45839955-45841865 (+)
DBA/2J	ENSMUSG00185032948	lncRNA gene	Chr14:50956529-50958439 (+)
FVB/NJ	ENSMUSG00205048367	lncRNA gene	Chr14:45243582-45245492 (+)
JF1/MsJ	ENSUMUG00000048540	lncRNA gene	Chr14:62118361-62120262 (+)
LP/J	ENSMUSG00230053385	lncRNA gene	Chr14:63003292-63005202 (+)
NOD/ShiLtJ	ENSMUSG00190051923	lncRNA gene	Chr14:45606257-45608167 (+)
NZO/HlLtJ	ENSMUSG00225046920	lncRNA gene	Chr14:53293644-53295554 (+)
PWK/PhJ	ENSLUMG00010049370	lncRNA gene	Chr14:45063205-45065115 (+)
SPRET/EiJ	ENSMSPG00010048497	lncRNA gene	Chr14:48554944-48556853 (+)
WSB/EiJ	ENSIUOG00005047624	lncRNA gene	Chr14:45021811-45023720 (+)

Homology

• Gene Tree
  2410022M11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 2410022M11Rik
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  10

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1
• UniProt
  3

• Ensembl
  ENSMUSG00000100017 (Evidence)
• NCBI Gene
  100503842

Representative Sequences			Length	Strain/Species
genomic	100503842	NCBI Gene Model | MGI Sequence Detail	1911	C57BL/6J
transcript	NR_152252	RefSeq | MGI Sequence Detail	1911	C57BL/6
polypeptide	Q9CRH7	UniProt | EBI | MGI Sequence Detail	186	Not Applicable

Protein
Information

• UniProt
  3 Sequences

Molecular
Reagents

• All nucleic 10

  cDNA 10

  
  

  Microarray probesets 2

References

• Summaries
  All 16

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 2410022M11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125853	Chr14:57049432-57049459 (+)	0 bp