2410017I17Rik Gene Detail

Summary

• Symbol
  2410017I17Rik
• Name
  RIKEN cDNA 2410017I17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916967
  NCBI Gene: 675325
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:36455910-36473266 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 18.96 cM, cytoband B3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  594 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916967	lncRNA gene	Chr17:36455910-36474068 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195049155	lncRNA gene	Chr17:33068007-33083812 (+)
AKR/J	ENSMUSG00220052306	lncRNA gene	Chr17:31931143-31949293 (+)
BALB/cJ	ENSMUSG00180043233	lncRNA gene	Chr17:32559517-32577665 (+)
C3H/HeJ	ENSMUSG00175043896	lncRNA gene	Chr17:31816955-31835105 (+)
C57BL/6NJ	ENSMUSG00215053751	lncRNA gene	Chr17:31885812-31903970 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005202	lincRNA gene	Chr17:30307475-32970099 (+)
CAST/EiJ	ENSTCUG00005052452	lncRNA gene	Chr17:32971044-32993505 (+)
CBA/J	ENSMUSG00210052381	lncRNA gene	Chr17:31638957-31657105 (+)
DBA/2J	ENSMUSG00185054987	lncRNA gene	Chr17:34578648-34596796 (+)
FVB/NJ	ENSMUSG00205053486	lncRNA gene	Chr17:32124199-32140003 (+)
JF1/MsJ	ENSUMUG00000057992	lncRNA gene	Chr17:33418793-33465509 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190053339	lncRNA gene	Chr17:31743301-31759103 (+)
NZO/HlLtJ	ENSMUSG00225054980	lncRNA gene	Chr17:37642988-37661132 (+)
PWK/PhJ	ENSLUMG00010043853	lncRNA gene	Chr17:31363756-31365137 (+)
SPRET/EiJ	ENSMSPG00010051317	lncRNA gene	Chr17:32645928-32664329 (+)
WSB/EiJ	ENSIUOG00005051753	lncRNA gene	Chr17:32550706-32556435 (+)

Homology

• Gene Tree
  2410017I17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  59
• Gene trapped
  58
• Targeted
  1
• Genomic Mutations
  1 involving 2410017I17Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  16 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000038311 (Evidence)
• NCBI Gene
  675325

Representative Sequences			Length	Strain/Species
genomic	675325	NCBI Gene Model | MGI Sequence Detail	17357	C57BL/6J
transcript	NR_033517	RefSeq | MGI Sequence Detail	1511	C57BL/6
polypeptide	Q9CWM8	UniProt | EBI | MGI Sequence Detail	195	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 3

References

• Summaries
  All 18

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:190754 Ermakova O, et al., Construction and phenotypic analysis of mice carrying a duplication of the major histocompatibility class I (MHC-I) locus. Mamm Genome. 2012 Aug;23(7-8):443-53

TSS for 2410017I17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr144507	Chr17:36454060-36454079 (+)	-1,840 bp