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Col22a1 Gene Detail
Summary
  • Symbol
    Col22a1
  • Name
    collagen, type XXII, alpha 1
  • Synonyms
    2310067L16Rik, C80743
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916950
    NCBI Gene: 69700
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:71667644-71906076 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 32.31 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    10244 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916950
 protein coding gene Chr15:71667644-71906087 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021915
 protein coding gene Chr15:71460343-71707404 (-)
A/J MGP_AJ_G0021874
 protein coding gene Chr15:68894197-69146467 (-)
AKR/J MGP_AKRJ_G0021856
 protein coding gene Chr15:70655245-70902457 (-)
BALB/cJ MGP_BALBcJ_G0021881
 protein coding gene Chr15:68909640-69150686 (-)
C3H/HeJ MGP_C3HHeJ_G0021654
 protein coding gene Chr15:70800685-71047532 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022320
 protein coding gene Chr15:74215069-74461108 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019857
 protein coding gene Chr15:65377965-65617636 (-)
CAST/EiJ MGP_CASTEiJ_G0021173
 protein coding gene Chr15:71517307-71772039 (-)
CBA/J MGP_CBAJ_G0021620
 protein coding gene Chr15:76643155-76904909 (-)
DBA/2J MGP_DBA2J_G0021745
 protein coding gene Chr15:68510398-68760441 (-)
FVB/NJ MGP_FVBNJ_G0021727
 protein coding gene Chr15:67526859-67771284 (-)
LP/J MGP_LPJ_G0021817
 protein coding gene Chr15:71482122-71734274 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021750
 protein coding gene Chr15:82045063-82299077 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022342
 protein coding gene Chr15:71054216-71302958 (-)
PWK/PhJ MGP_PWKPhJ_G0020914
 protein coding gene Chr15:68586880-68830779 (-)
SPRET/EiJ MGP_SPRETEiJ_G0020755
 protein coding gene Chr15:70881756-71169538 (-)
WSB/EiJ MGP_WSBEiJ_G0021225
 protein coding gene Chr15:71033897-71286673 (-)



Homology
more
  • Human Ortholog
    COL22A1, collagen type XXII alpha 1 chain
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    COL22A1, collagen type XXII alpha 1 chain
  • Links
    NCBI Gene ID: 169044
    UniProt: Q8NFW1

  • Chr Location
    8q24.23-q24.3; chr8:138588235-138914041 (-)  GRCh38
Human Diseases
more
  • Diseases
    1 with human COL22A1 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    29 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

Biological Process

Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    766
  • Tissues
    54
  • cDNA Data
    16
  • Literature Summary
    8
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000079022 Ensembl Gene Model | MGI Sequence Detail 238433 C57BL/6J ±  kb
transcript ENSMUST00000159993 Ensembl | MGI Sequence Detail 8809 Not Applicable  
polypeptide ENSMUSP00000125069 Ensembl | MGI Sequence Detail 1613 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR050938 Collagen and Collagen-like Structural Proteins
    IPR050149 Collagen superfamily
    IPR008160 Collagen triple helix repeat
    IPR013320 Concanavalin A-like lectin/glucanase domain superfamily
    IPR048287 Thrombospondin-like, N-terminal domain
    IPR036465 von Willebrand factor A-like domain superfamily
    IPR002035 von Willebrand factor, type A
  • GlyGen
    E9Q7P1 4 sites
Molecular
Reagents
less
  • All nucleic 20
    cDNA 17
    Primer pair 2
    Other 1

    Microarray probesets 4
Other
Accession IDs
less
MGI:2146297
References
more
  • Summaries
    All 54
    Developmental Gene Expression 8
    Diseases 1
    Gene Ontology 1
    Phenotypes 29
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:346064 Leung AOW, et al., Suppression of apoptosis impairs phalangeal joint formation in the pathogenesis of brachydactyly type A1. Nat Commun. 2024 Mar 12;15(1):2229
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory