2310069G16Rik Gene Detail

Summary

• Symbol
  2310069G16Rik
• Name
  RIKEN cDNA 2310069G16 gene

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1916909
  NCBI Gene: 69659
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:44651159-44669225 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 16.99 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  497 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916909	lncRNA gene	Chr15:44615481-44748137 (+)
129S1/SvImJ	ENSMUSG00200019185	protein coding gene	Chr15:41540218-41672885 (+)
A/J	ENSMUSG00195005460	protein coding gene	Chr15:41552068-41685393 (+)
AKR/J	ENSMUSG00220017950	protein coding gene	Chr15:41515834-41649091 (+)
BALB/cJ	ENSMUSG00180004490	protein coding gene	Chr15:41535842-41668888 (+)
C3H/HeJ	ENSMUSG00175020066	protein coding gene	Chr15:41774238-41907528 (+)
C57BL/6NJ	ENSMUSG00215003227	protein coding gene	Chr15:41549562-41682833 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013657	protein coding gene	Chr15:41517967-41652212 (+)
CBA/J	ENSMUSG00210026412	protein coding gene	Chr15:41653694-41786357 (+)
DBA/2J	ENSMUSG00185012898	protein coding gene	Chr15:41619236-41751904 (+)
FVB/NJ	ENSMUSG00205012904	protein coding gene	Chr15:41566765-41705468 (+)
JF1/MsJ	ENSUMUG00000022465	protein coding gene	Chr15:41486550-41606624 (+)
LP/J	ENSMUSG00230013684	protein coding gene	Chr15:44923871-45056532 (+)
NOD/ShiLtJ	ENSMUSG00190008439	protein coding gene	Chr15:41590493-41741376 (+)
NZO/HlLtJ	ENSMUSG00225037618	protein coding gene	Chr15:45288585-45423056 (+)
PWK/PhJ	ENSLUMG00010012066	protein coding gene	Chr15:41669941-41789630 (+)
SPRET/EiJ	ENSMSPG00010006752	protein coding gene	Chr15:42634635-42674403 (+)
WSB/EiJ	ENSIUOG00005020739	protein coding gene	Chr15:41607981-41741730 (+)

Homology

• Gene Tree
  2310069G16Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving 2310069G16Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  3
• GO References
  2

Expression

• cDNA Data
  3

• Other Mouse Links
  Allen Institute
  GEO

Sequences &
Gene Models

• All Sequences
  79
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000121790 (Evidence)
• NCBI Gene
  69659

Representative Sequences			Length	Strain/Species
genomic	69659	NCBI Gene Model | MGI Sequence Detail	18067	C57BL/6J
transcript	NR_040309	RefSeq | MGI Sequence Detail	879	C57BL/6
polypeptide	A0ABJ3HNX3	UniProt | EBI | MGI Sequence Detail	976	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR018834 DNA/RNA-binding domain, Est1-type
  IPR045153 Est1/Ebs1-like
  IPR019458 Telomerase activating protein Est1-like, N-terminal
  IPR011990 Tetratricopeptide-like helical domain superfamily
• GlyGen
  A0ABJ3HNX3 1 site

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 18

  Gene Ontology 2

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 2310069G16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131235	Chr15:44651142-44651165 (+)	-5 bp