2310047D07Rik Gene Detail

Summary

• Symbol
  2310047D07Rik
• Name
  RIKEN cDNA 2310047D07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916907
  NCBI Gene: 69657
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:149165833-149174787 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  455 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916907	lncRNA gene	Chr5:149165833-149175193 (+)
129S1/SvImJ	ENSMUSG00200011047	lncRNA gene	Chr5:143001329-143001679 (+)
A/J	ENSMUSG00195004994	lncRNA gene	Chr5:142616249-142616599 (+)
AKR/J	ENSMUSG00220015369	lncRNA gene	Chr5:141614342-141614692 (+)
BALB/cJ	ENSMUSG00180003125	lncRNA gene	Chr5:143018641-143018991 (+)
C3H/HeJ	ENSMUSG00175012326	lncRNA gene	Chr5:144859468-144859818 (+)
C57BL/6NJ	ENSMUSG00215000060	lncRNA gene	Chr5:142557058-142557408 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010001	lncRNA gene	Chr5:142131945-142132295 (+)
CBA/J	ENSMUSG00210001171	lncRNA gene	Chr5:143747238-143747588 (+)
DBA/2J	ENSMUSG00185042933	lncRNA gene	Chr5:146717362-146717712 (+)
FVB/NJ	ENSMUSG00205043011	lncRNA gene	Chr5:142397525-142397875 (+)
JF1/MsJ	ENSUMUG00000052598	lncRNA gene	Chr5:149210734-149211084 (+)
LP/J	ENSMUSG00230029836	lncRNA gene	Chr5:150718029-150718379 (+)
NOD/ShiLtJ	ENSMUSG00190005977	lncRNA gene	Chr5:142359016-142359366 (+)
NZO/HlLtJ	ENSMUSG00225009244	lncRNA gene	Chr5:158463188-158463538 (+)
PWK/PhJ	ENSLUMG00010000448	lncRNA gene	Chr5:141476471-141476821 (+)
SPRET/EiJ	ENSMSPG00010006899	lncRNA gene	Chr5:144251613-144251963 (+)
WSB/EiJ	ENSIUOG00005014148	lncRNA gene	Chr5:145140348-145140698 (+)

Homology

• Gene Tree
  2310047D07Rik
  

Expression

• cDNA Data
  2

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  67
• RefSeq
  13

• Ensembl
  ENSMUSG00000120179 (Evidence)
• NCBI Gene
  69657

Representative Sequences			Length	Strain/Species
genomic	69657	NCBI Gene Model | MGI Sequence Detail	8955	C57BL/6J
transcript	AK009869	GenBank | ENA | DDBJ | MGI Sequence Detail	525	C57BL/6J

Molecular
Reagents

• All nucleic 3

  Genomic 1

  cDNA 2

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:7338423

References

• Summaries
  All 14
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 2310047D07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49882	Chr5:149166023-149166052 (+)	205 bp
Tssr49883	Chr5:149172080-149172097 (+)	6,256 bp