2310014F06Rik Gene Detail

Summary

• Symbol
  2310014F06Rik
• Name
  RIKEN cDNA 2310014F06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916875
  NCBI Gene: 69625
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:112211767-112279288 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 58.79 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  646 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916875	lncRNA gene	Chr7:112211767-112279288 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015685	unclassified non-coding RNA gene	Chr7:116198936-116275227 (-)
A/J	MGP_AJ_G0015663	unclassified non-coding RNA gene	Chr7:113293081-113360762 (-)
AKR/J	MGP_AKRJ_G0015626	unclassified non-coding RNA gene	Chr7:116141563-116216676 (-)
BALB/cJ	MGP_BALBcJ_G0015624	unclassified non-coding RNA gene	Chr7:112987937-113060160 (-)
C3H/HeJ	MGP_C3HHeJ_G0015446	unclassified non-coding RNA gene	Chr7:116140457-116217147 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016079	unclassified non-coding RNA gene	Chr7:120929750-121000007 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013808	unclassified non-coding RNA gene	Chr7:114890762-114956579 (-)
CAST/EiJ	MGP_CASTEiJ_G0015001	unclassified non-coding RNA gene	Chr7:107749361-107820135 (-)
CBA/J	MGP_CBAJ_G0015427	unclassified non-coding RNA gene	Chr7:124921052-125003447 (-)
DBA/2J	MGP_DBA2J_G0015523	unclassified non-coding RNA gene	Chr7:111375896-111443119 (-)
FVB/NJ	MGP_FVBNJ_G0015529	unclassified non-coding RNA gene	Chr7:111222450-111289175 (-)
LP/J	MGP_LPJ_G0015603	unclassified non-coding RNA gene	Chr7:117701189-117775064 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015551	unclassified non-coding RNA gene	Chr7:126505611-126582487 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016121	unclassified non-coding RNA gene	Chr7:115140736-115206887 (-)
PWK/PhJ	MGP_PWKPhJ_G0014783	unclassified non-coding RNA gene	Chr7:104206528-104273987 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014572	unclassified non-coding RNA gene	Chr7:101892313-101967003 (-)
WSB/EiJ	MGP_WSBEiJ_G0015106	unclassified non-coding RNA gene	Chr7:116010625-116081510 (-)

Homology

• Gene Tree
  2310014F06Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000085945 (Evidence)
• NCBI Gene
  69625

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085945	Ensembl Gene Model | MGI Sequence Detail	67522	C57BL/6J
transcript	ENSMUST00000146145	Ensembl | MGI Sequence Detail	1567	Not Applicable

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 2310014F06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr2374	Chr7:112280257-112280276 (-)	-979 bp