1700030I03Rik Gene Detail

Summary

• Symbol
  1700030I03Rik
• Name
  RIKEN cDNA 1700030I03 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916753
  NCBI Gene: 105244955
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:83168988-83169929 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  130 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916753	lncRNA gene	Chr12:83168988-83172040 (+)
129S1/SvImJ	ENSMUSG00200051659	unclassified gene	Chr12:75176260-75177201 (+)
A/J	ENSMUSG00195033690	unclassified gene	Chr12:77793850-77794791 (+)
AKR/J	ENSMUSG00220049098	unclassified gene	Chr12:75589266-75590207 (+)
BALB/cJ	ENSMUSG00180026848	unclassified gene	Chr12:76836240-76837181 (+)
C3H/HeJ	ENSMUSG00175043405	unclassified gene	Chr12:79925768-79926709 (+)
C57BL/6NJ	ENSMUSG00215045730	unclassified gene	Chr12:76143396-76144337 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000638	unclassified gene	Chr12:77504222-77505159 (+)
CAST/EiJ	ENSTCUG00005031867	unclassified gene	Chr12:76093738-76094677 (+)
CBA/J	ENSMUSG00210047244	unclassified gene	Chr12:76340020-76340961 (+)
DBA/2J	ENSMUSG00185045215	unclassified gene	Chr12:78196506-78197447 (+)
FVB/NJ	ENSMUSG00205043235	unclassified gene	Chr12:76007364-76008305 (+)
JF1/MsJ	ENSUMUG00000052658	unclassified gene	Chr12:82194615-82195556 (+)
LP/J	ENSMUSG00230047121	unclassified gene	Chr12:85259064-85260005 (+)
NOD/ShiLtJ	ENSMUSG00190049830	unclassified gene	Chr12:75396400-75397341 (+)
NZO/HlLtJ	ENSMUSG00225053425	unclassified gene	Chr12:87299327-87300268 (+)
PWK/PhJ	ENSLUMG00010029750	unclassified gene	Chr12:76196714-76197655 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005045175	unclassified gene	Chr12:76022032-76022971 (+)

Homology

• Gene Tree
  1700030I03Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 1700030I03Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000103387 (Evidence)
• NCBI Gene
  105244955

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103387	Ensembl Gene Model | MGI Sequence Detail	942	C57BL/6J
transcript	AK006550	GenBank | ENA | DDBJ | MGI Sequence Detail	943	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573