1700030I03Rik Gene Detail

Summary

• Symbol
  1700030I03Rik
• Name
  RIKEN cDNA 1700030I03 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916753
  NCBI Gene: 105244955
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:83168988-83169929 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  40 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916753	lncRNA gene	Chr12:83168988-83172040 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0000821	unclassified gene	Chr12:83717016-83717957 (+)
A/J	MGP_AJ_G0000797	unclassified gene	Chr12:80560668-80561609 (+)
AKR/J	MGP_AKRJ_G0000786	unclassified gene	Chr12:82738925-82739866 (+)
BALB/cJ	MGP_BALBcJ_G0000789	unclassified gene	Chr12:80908612-80909553 (+)
C3H/HeJ	MGP_C3HHeJ_G0000774	unclassified gene	Chr12:83199745-83200686 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0000904	unclassified gene	Chr12:86120555-86121496 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000638	unclassified gene	Chr12:77504222-77505159 (+)
CAST/EiJ	MGP_CASTEiJ_G0000765	unclassified gene	Chr12:78145675-78146614 (+)
CBA/J	MGP_CBAJ_G0000765	unclassified gene	Chr12:89424420-89425361 (+)
DBA/2J	MGP_DBA2J_G0000769	unclassified gene	Chr12:80122776-80123717 (+)
FVB/NJ	MGP_FVBNJ_G0000781	unclassified gene	Chr12:79055906-79056847 (+)
LP/J	MGP_LPJ_G0000826	unclassified gene	Chr12:83591640-83592581 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000773	unclassified gene	Chr12:92433389-92434330 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000898	unclassified gene	Chr12:82339541-82340482 (+)
PWK/PhJ	MGP_PWKPhJ_G0000718	unclassified gene	Chr12:74581941-74582882 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0000772	unclassified gene	Chr12:82987867-82988806 (+)

Homology

• Gene Tree
  1700030I03Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 1700030I03Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000103387 (Evidence)
• NCBI Gene
  105244955

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103387	Ensembl Gene Model | MGI Sequence Detail	942	C57BL/6J
transcript	AK006550	GenBank | ENA | DDBJ | MGI Sequence Detail	943	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573