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Cfap96 Gene Detail
Summary
  • Symbol
    Cfap96
  • Name
    cilia and flagella associated protein 96
  • Synonyms
    1700029J07Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916729
    NCBI Gene: 69479
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:46406643-46428477 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 8, 25.94 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    174 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916729
protein coding gene Chr8:46387980-46428477 (-)
129S1/SvImJ MGP_129S1SvImJ_G0033580
protein coding gene Chr8:45022122-45057828 (-)
A/J MGP_AJ_G0033562
protein coding gene Chr8:43294042-43315934 (-)
AKR/J MGP_AKRJ_G0033487
protein coding gene Chr8:44560344-44588275 (-)
BALB/cJ MGP_BALBcJ_G0033559
protein coding gene Chr8:43473927-43495785 (-)
C3H/HeJ MGP_C3HHeJ_G0033268
protein coding gene Chr8:45080868-45117068 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034075
protein coding gene Chr8:46730195-46756535 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031024
protein coding gene Chr8:39566486-39587773 (-)
CAST/EiJ MGP_CASTEiJ_G0032594
protein coding gene Chr8:44527238-44552064 (-)
CBA/J MGP_CBAJ_G0033247
protein coding gene Chr8:48620535-48648157 (-)
DBA/2J MGP_DBA2J_G0033400
protein coding gene Chr8:43101343-43124241 (-)
FVB/NJ MGP_FVBNJ_G0033341
protein coding gene Chr8:42598913-42621567 (-)
LP/J MGP_LPJ_G0033488
protein coding gene Chr8:45038066-45062196 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0033386
protein coding gene Chr8:48691693-48720310 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034093
protein coding gene Chr8:44722464-44748792 (-)
PWK/PhJ MGP_PWKPhJ_G0032302
protein coding gene Chr8:42624352-42646805 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032138
protein coding gene Chr8:43876797-43900958 (-)
WSB/EiJ MGP_WSBEiJ_G0032710
protein coding gene Chr8:44975452-45000109 (-)



Homology
more
  • Human Ortholog
    CFAP96, cilia and flagella associated protein 96
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CFAP96, cilia and flagella associated protein 96
  • Synonyms
    C4orf47
  • Links
    NCBI Gene ID: 441054
    neXtProt AC: NX_A7E2U8
    UniProt: A7E2U8

  • Chr Location
    4q35.1; chr4:185408434-185449826 (+)  GRCh38

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000071103 Ensembl Gene Model | MGI Sequence Detail 21835 C57BL/6J ±  kb
transcript ENSMUST00000095323 Ensembl | MGI Sequence Detail 2740 Not Applicable  
polypeptide ENSMUSP00000092961 Ensembl | MGI Sequence Detail 316 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 2
References
more
  • Summaries
    All 23
    Gene Ontology 2
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
02/13/2024
MGI 6.23
The Jackson Laboratory