1700028E10Rik Gene Detail

Summary

• Symbol
  1700028E10Rik
• Name
  RIKEN cDNA 1700028E10 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916713
  NCBI Gene: 625175
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr5:151292140-151337548 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 90.02 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  890 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916713	lncRNA gene	Chr5:151292140-151373703 (+)
129S1/SvImJ	ENSMUSG00200011361	lncRNA gene	Chr5:145145845-145209345 (+)
A/J	ENSMUSG00195005103	lncRNA gene	Chr5:144750661-144814116 (+)
AKR/J	ENSMUSG00220015676	lncRNA gene	Chr5:143757913-143821334 (+)
BALB/cJ	ENSMUSG00180003202	lncRNA gene	Chr5:145152876-145216329 (+)
C3H/HeJ	ENSMUSG00175012234	lncRNA gene	Chr5:147024432-147087876 (+)
C57BL/6NJ	ENSMUSG00215000097	lncRNA gene	Chr5:144683742-144747198 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013748	unclassified non-coding RNA gene	Chr5:144922973-144986299 (+)
CAST/EiJ	ENSTCUG00005010231	lncRNA gene	Chr5:144279434-144343448 (+)
CBA/J	ENSMUSG00210001105	lncRNA gene	Chr5:145873709-145937159 (+)
DBA/2J	ENSMUSG00185041777	lncRNA gene	Chr5:148850311-148913768 (+)
FVB/NJ	ENSMUSG00205000136	lncRNA gene	Chr5:144532857-144596297 (+)
JF1/MsJ	ENSUMUG00000053427	lncRNA gene	Chr5:151368201-151431708 (+)
LP/J	ENSMUSG00230001547	lncRNA gene	Chr5:152862364-152925862 (+)
NOD/ShiLtJ	ENSMUSG00190006149	lncRNA gene	Chr5:144499972-144563394 (+)
NZO/HlLtJ	ENSMUSG00225009431	lncRNA gene	Chr5:160596011-160659459 (+)
PWK/PhJ	ENSLUMG00010000419	lncRNA gene	Chr5:143613156-143676596 (+)
SPRET/EiJ	ENSMSPG00010006947	lncRNA gene	Chr5:146399999-146464064 (+)
WSB/EiJ	ENSIUOG00005014848	lncRNA gene	Chr5:147284958-147348407 (+)

Homology

• Gene Tree
  1700028E10Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  12
• Endonuclease-mediated
  2
• Gene trapped
  10
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  52
• RefSeq
  2

• Ensembl
  ENSMUSG00000097321 (Evidence)
• NCBI Gene
  625175

Representative Sequences			Length	Strain/Species
genomic	625175	NCBI Gene Model | MGI Sequence Detail	45409	C57BL/6J
transcript	NR_045699	RefSeq | MGI Sequence Detail	2068	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

Other
Accession IDs

MGI:3779608

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 1700028E10Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49976	Chr5:151292148-151292188 (+)	28 bp
Tssr49977	Chr5:151292457-151292478 (+)	328 bp
Tssr49978	Chr5:151294839-151294843 (+)	2,701 bp
Tssr49979	Chr5:151323570-151323611 (+)	31,451 bp
Tssr49980	Chr5:151323704-151323715 (+)	31,570 bp
Tssr49981	Chr5:151324578-151324599 (+)	32,449 bp