1700023H06Rik Gene Detail

Summary

• Symbol
  1700023H06Rik
• Name
  RIKEN cDNA 1700023H06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916692
  NCBI Gene: 69442
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr13:81032337-81035213 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 41.95 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916692	lncRNA gene	Chr13:81032337-81035213 (-)
129S1/SvImJ	ENSMUSG00200006060	lncRNA gene	Chr13:75471475-75472788 (-)
A/J	ENSMUSG00195026218	lncRNA gene	Chr13:75981486-75982786 (-)
AKR/J	ENSMUSG00220016900	lncRNA gene	Chr13:74528675-74529975 (-)
BALB/cJ	ENSMUSG00180001462	lncRNA gene	Chr13:76484176-76485476 (-)
C3H/HeJ	ENSMUSG00175019137	lncRNA gene	Chr13:76728949-76730250 (-)
C57BL/6NJ	ENSMUSG00215002673	lncRNA gene	Chr13:76610034-76611335 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013394	unclassified non-coding RNA gene	Chr13:75295739-75297035 (-)
CAST/EiJ	ENSTCUG00005004255	lncRNA gene	Chr13:75977904-75979208 (-)
CBA/J	ENSMUSG00210005867	lncRNA gene	Chr13:76019011-76020312 (-)
DBA/2J	ENSMUSG00185019137	lncRNA gene	Chr13:79699294-79700595 (-)
FVB/NJ	ENSMUSG00205013012	lncRNA gene	Chr13:75468174-75469474 (-)
JF1/MsJ	ENSUMUG00000031044	lncRNA gene	Chr13:79476266-79477559 (-)
LP/J	ENSMUSG00230027213	lncRNA gene	Chr13:89686249-89687549 (-)
NOD/ShiLtJ	ENSMUSG00190008761	lncRNA gene	Chr13:76030148-76031449 (-)
NZO/HlLtJ	ENSMUSG00225030622	lncRNA gene	Chr13:82203995-82205295 (-)
PWK/PhJ	ENSLUMG00010014638	lncRNA gene	Chr13:75588836-75590126 (-)
SPRET/EiJ	ENSMSPG00010001473	lncRNA gene	Chr13:76473269-76474556 (-)
WSB/EiJ	ENSIUOG00005017584	lncRNA gene	Chr13:75312456-75313766 (-)

Homology

• Gene Tree
  1700023H06Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving 1700023H06Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000089827 (Evidence)
• NCBI Gene
  69442

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089827	Ensembl Gene Model | MGI Sequence Detail	2877	C57BL/6J
transcript	ENSMUST00000161006	Ensembl | MGI Sequence Detail	1112	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 13

  Phenotypes 4
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700023H06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr123310	Chr13:81034121-81034159 (-)	1,073 bp
Tssr123309	Chr13:81033716-81033736 (-)	1,487 bp
Tssr123308	Chr13:81033667-81033678 (-)	1,540 bp
Tssr123307	Chr13:81033628-81033651 (-)	1,573 bp
Tssr123306	Chr13:81032845-81032864 (-)	2,358 bp