1700022N22Rik Gene Detail

Summary

• Symbol
  1700022N22Rik
• Name
  RIKEN cDNA 1700022N22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916681
  NCBI Gene: 69431
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:26204804-26210004 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 13.05 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  197 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916681	lncRNA gene	Chr17:26204470-26218453 (+)
129S1/SvImJ	ENSMUSG00200054380	lncRNA gene	Chr17:21649802-21655049 (+)
A/J	ENSMUSG00195054468	lncRNA gene	Chr17:22666972-22672216 (+)
AKR/J	ENSMUSG00220053511	lncRNA gene	Chr17:21713766-21719013 (+)
BALB/cJ	ENSMUSG00180052262	lncRNA gene	Chr17:21947831-21953078 (+)
C3H/HeJ	ENSMUSG00175053804	lncRNA gene	Chr17:21706000-21711244 (+)
C57BL/6NJ	ENSMUSG00215054338	lncRNA gene	Chr17:21714369-21719611 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005183	lincRNA gene	Chr17:21823290-21825990 (+)
CAST/EiJ	ENSTCUG00005052128	lncRNA gene	Chr17:22295736-22300939 (+)
CBA/J	ENSMUSG00210051550	lncRNA gene	Chr17:21544838-21550082 (+)
DBA/2J	ENSMUSG00185053519	lncRNA gene	Chr17:23755215-23760459 (+)
FVB/NJ	ENSMUSG00205053419	lncRNA gene	Chr17:22010931-22016175 (+)
JF1/MsJ	ENSUMUG00000058070	lncRNA gene	Chr17:23210418-23215640 (+)
LP/J	ENSMUSG00230055094	lncRNA gene	Chr17:25154333-25159580 (+)
NOD/ShiLtJ	ENSMUSG00190054162	lncRNA gene	Chr17:21643936-21649180 (+)
NZO/HlLtJ	ENSMUSG00225054416	lncRNA gene	Chr17:27074283-27079527 (+)
PWK/PhJ	ENSLUMG00010053526	lncRNA gene	Chr17:21129479-21134698 (+)
SPRET/EiJ	ENSMSPG00010050992	lncRNA gene	Chr17:22447788-22452953 (+)
WSB/EiJ	ENSIUOG00005052161	lncRNA gene	Chr17:22387654-22392885 (+)

Homology

• Gene Tree
  1700022N22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  6
• Gene trapped
  4
• Radiation induced
  2
• Genomic Mutations
  2 involving 1700022N22Rik
• Find Mice (IMSR)
  4 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  45
• RefSeq
  3

• Ensembl
  ENSMUSG00000097523 (Evidence)
• NCBI Gene
  69431

Representative Sequences			Length	Strain/Species
genomic	69431	NCBI Gene Model | MGI Sequence Detail	5201	C57BL/6J
transcript	NR_166912	RefSeq | MGI Sequence Detail	931	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 15

  Phenotypes 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044

TSS for 1700022N22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143199	Chr17:26204799-26204808 (+)	0 bp