1700025D23Rik Gene Detail

Summary

• Symbol
  1700025D23Rik
• Name
  RIKEN cDNA 1700025D23 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916667
  NCBI Gene: 100041739
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:113982235-113986157 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 79.65 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  223 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916667	lncRNA gene	Chr11:113982199-113986163 (+)
129S1/SvImJ	ENSMUSG00200034430	lncRNA gene	Chr11:111331895-111335811 (+)
A/J	ENSMUSG00195021962	lncRNA gene	Chr11:111055329-111059237 (+)
AKR/J	ENSMUSG00220035238	lncRNA gene	Chr11:111158230-111162156 (+)
BALB/cJ	ENSMUSG00180018909	lncRNA gene	Chr11:111348729-111352665 (+)
C3H/HeJ	ENSMUSG00175014201	lncRNA gene	Chr11:111307405-111311309 (+)
C57BL/6NJ	ENSMUSG00215020645	lncRNA gene	Chr11:110828800-110832732 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004821	lincRNA gene	Chr11:109926769-109930667 (+)
CAST/EiJ	ENSTCUG00005042291	lncRNA gene	Chr11:110728495-110738824 (+)
CBA/J	ENSMUSG00210013847	lncRNA gene	Chr11:111027736-111031640 (+)
DBA/2J	ENSMUSG00185020650	lncRNA gene	Chr11:111341523-111345457 (+)
FVB/NJ	ENSMUSG00205041147	lncRNA gene	Chr11:111175919-111179835 (+)
JF1/MsJ	ENSUMUG00000053655	lncRNA gene	Chr11:111615201-111619115 (+)
LP/J	ENSMUSG00230050830	lncRNA gene	Chr11:112395112-112399024 (+)
NOD/ShiLtJ	ENSMUSG00190023813	lncRNA gene	Chr11:111345580-111349492 (+)
NZO/HlLtJ	ENSMUSG00225053608	lncRNA gene	Chr11:114445561-114449473 (+)
PWK/PhJ	ENSLUMG00010016686	lncRNA gene	Chr11:111146511-111150421 (+)
SPRET/EiJ	ENSMSPG00010037902	lncRNA gene	Chr11:111667869-111672277 (+)
WSB/EiJ	ENSIUOG00005018216	lncRNA gene	Chr11:111104796-111108725 (+)

Homology

• Gene Tree
  1700025D23Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  2

• Ensembl
  ENSMUSG00000086760 (Evidence)
• NCBI Gene
  100041739

Representative Sequences			Length	Strain/Species
genomic	100041739	NCBI Gene Model | MGI Sequence Detail	3923	C57BL/6J
transcript	NR_166914	RefSeq | MGI Sequence Detail	1387	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 12

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 1700025D23Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105769	Chr11:113982230-113982239 (+)	0 bp
Tssr105770	Chr11:113982255-113982269 (+)	27 bp
Tssr105771	Chr11:113982300-113982341 (+)	86 bp