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Cdhr4 Gene Detail
Summary
  • Symbol
    Cdhr4
  • Name
    cadherin-related family member 4
  • Synonyms
    1700021K14Rik, Cdh29, D330022A01Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916648
    NCBI Gene: 69398
  • Alliance
    genome feature page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:107869696-107876883 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 59.07 cM, cytoband F2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    203 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916648
 protein coding gene Chr9:107869656-107876883 (+)
129S1/SvImJ ENSMUSG00200042157
 protein coding gene Chr9:105067665-105074852 (+)
A/J ENSMUSG00195038488
 protein coding gene Chr9:104286286-104293474 (+)
AKR/J ENSMUSG00220023053
 protein coding gene Chr9:104673334-104680523 (+)
BALB/cJ ENSMUSG00180029795
 protein coding gene Chr9:104602797-104609984 (+)
C3H/HeJ ENSMUSG00175034477
 protein coding gene Chr9:104945090-104952277 (+)
C57BL/6NJ ENSMUSG00215024206
 protein coding gene Chr9:104922299-104929486 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032670
 protein coding gene Chr9:103329460-103336816 (+)
CAST/EiJ ENSTCUG00005029263
 protein coding gene Chr9:104696232-104703410 (+)
CBA/J ENSMUSG00210036651
 protein coding gene Chr9:104794662-104801861 (+)
DBA/2J ENSMUSG00185030977
 protein coding gene Chr9:104954126-104961313 (+)
FVB/NJ ENSMUSG00205027628
 protein coding gene Chr9:104955833-104963020 (+)
JF1/MsJ ENSUMUG00000047142
 protein coding gene Chr9:104783895-104791094 (+)
LP/J ENSMUSG00230044627
 protein coding gene Chr9:105096560-105103747 (+)
NOD/ShiLtJ ENSMUSG00190025929
 protein coding gene Chr9:104592966-104600153 (+)
NZO/HlLtJ ENSMUSG00225022648
 protein coding gene Chr9:105327414-105334601 (+)
PWK/PhJ ENSLUMG00010033291
 protein coding gene Chr9:104740953-104748135 (+)
SPRET/EiJ ENSMSPG00010041779
 protein coding gene Chr9:106570908-106578116 (+)
WSB/EiJ ENSIUOG00005034523
 protein coding gene Chr9:104039611-104046798 (+)



Homology
more
  • Human Ortholog
    CDHR4, cadherin related family member 4
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CDHR4, cadherin related family member 4
  • Synonyms
    CDH29, PRO34300
  • Links
    NCBI Gene ID: 389118
    UniProt: A6H8M9

  • Chr Location
    3p21.31; chr3:49790732-49802914 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    11
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    10
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000032595 Ensembl Gene Model | MGI Sequence Detail 7188 C57BL/6J ±  kb
transcript ENSMUST00000177173 Ensembl | MGI Sequence Detail 2480 Not Applicable  
polypeptide ENSMUSP00000135184 Ensembl | MGI Sequence Detail 783 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 5
Other
Accession IDs
less
MGI:2143196, MGI:2443519
References
more
  • Summaries
    All 29
    Gene Ontology 4
    Phenotypes 3
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory