1700018A04Rik Gene Detail

Summary

• Symbol
  1700018A04Rik
• Name
  RIKEN cDNA 1700018A04 gene
• Synonyms
  4930551G20Rik, 4933439J11Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1916631
  NCBI Gene: 71307
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:31749475-31766496 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 13.46 cM, cytoband A4
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  615 from dbSNP Build 142
• Strain Annotations
  30

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916631	lncRNA gene	Chr13:31726116-31809775 (-)
129S1/SvImJ	ENSMUSG00200030638	protein coding gene	Chr13:28951536-28955419 (-)
129S1/SvImJ	ENSMUSG00200031326	lncRNA gene	Chr13:28938325-28998659 (-)
A/J	ENSMUSG00195039132	lncRNA gene	Chr13:28052421-28108888 (-)
A/J	ENSMUSG00195035899	protein coding gene	Chr13:28065606-28069489 (-)
AKR/J	ENSMUSG00220012950	lncRNA gene	Chr13:27911758-27968225 (-)
AKR/J	ENSMUSG00220012764	protein coding gene	Chr13:27924942-27928825 (-)
BALB/cJ	ENSMUSG00180021765	protein coding gene	Chr13:28365753-28369636 (-)
BALB/cJ	ENSMUSG00180022942	lncRNA gene	Chr13:28352569-28409043 (-)
C3H/HeJ	ENSMUSG00175032660	lncRNA gene	Chr13:28374922-28431388 (-)
C3H/HeJ	ENSMUSG00175029044	protein coding gene	Chr13:28388106-28391989 (-)
C57BL/6NJ	ENSMUSG00215010566	protein coding gene	Chr13:28555200-28559083 (-)
C57BL/6NJ	ENSMUSG00215013855	lncRNA gene	Chr13:28542016-28602334 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004942	lincRNA gene	Chr13:27076983-27094874 (-)
CAST/EiJ	ENSTCUG00005010593	lncRNA gene	Chr13:28504395-28563619 (-)
CBA/J	ENSMUSG00210026408	protein coding gene	Chr13:28331750-28335633 (-)
CBA/J	ENSMUSG00210027817	lncRNA gene	Chr13:28318566-28375018 (-)
DBA/2J	ENSMUSG00185018910	protein coding gene	Chr13:29150803-29154686 (-)
DBA/2J	ENSMUSG00185021281	lncRNA gene	Chr13:29137618-29194082 (-)
FVB/NJ	ENSMUSG00205028860	lncRNA gene	Chr13:28154810-28215139 (-)
FVB/NJ	ENSMUSG00205018627	protein coding gene	Chr13:28167993-28171876 (-)
JF1/MsJ	ENSUMUG00000023695	lncRNA gene	Chr13:28765973-28832057 (-)
LP/J	ENSMUSG00230019094	protein coding gene	Chr13:38475416-38479299 (-)
LP/J	ENSMUSG00230020949	lncRNA gene	Chr13:38462232-38518692 (-)
NOD/ShiLtJ	ENSMUSG00190036333	lncRNA gene	Chr13:28518965-28579300 (-)
NOD/ShiLtJ	ENSMUSG00190030800	protein coding gene	Chr13:28532148-28536031 (-)
NZO/HlLtJ	ENSMUSG00225035492	lncRNA gene	Chr13:32258649-32318966 (-)
PWK/PhJ	ENSLUMG00010032817	lncRNA gene	Chr13:27560859-27627719 (-)
SPRET/EiJ	ENSMSPG00010025546	lncRNA gene	Chr13:27634560-27693664 (-)
WSB/EiJ	ENSIUOG00005016729	lncRNA gene	Chr13:27722824-27779807 (-)

Homology

• Gene Tree
  1700018A04Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 1700018A04Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  600
• Tissues
  1
• cDNA Data
  7
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  113
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000038408 (Evidence)
• NCBI Gene
  71307

Representative Sequences			Length	Strain/Species
genomic	71307	NCBI Gene Model | MGI Sequence Detail	17022	C57BL/6J
transcript	NR_029439	RefSeq | MGI Sequence Detail	714	C57BL/6
polypeptide	Q3UQW1	UniProt | EBI | MGI Sequence Detail	154	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 8

  cDNA 7

  Other 1

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:1918557, MGI:1922498

References

• Summaries
  All 25

  Developmental Gene Expression 1

  Phenotypes 8
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:306327 Xu J, et al., Cis-Repression of Foxq1 Expression Affects Foxf2-Mediated Gene Expression in Palate Development. Front Cell Dev Biol. 2021;9:665109

TSS for 1700018A04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr121988	Chr13:31766482-31766501 (-)	4 bp