Med9os Gene Detail

Summary

• Symbol
  Med9os
• Name
  mediator complex subunit 9, opposite strand
• Synonyms
  1700013G23Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1916628
  NCBI Gene: 100504121
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:59837718-59838973 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 37.81 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916628	antisense lncRNA gene	Chr11:59785803-59839050 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0002975	antisense lncRNA gene	Chr11:59803949-59805202 (-)
A/J	MGP_AJ_G0002952	antisense lncRNA gene	Chr11:57531963-57533224 (-)
AKR/J	MGP_AKRJ_G0002933	antisense lncRNA gene	Chr11:59448045-59449297 (-)
BALB/cJ	MGP_BALBcJ_G0002939	antisense lncRNA gene	Chr11:57874107-57875360 (-)
C3H/HeJ	MGP_C3HHeJ_G0002895	antisense lncRNA gene	Chr11:59326185-59328287 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003081	antisense lncRNA gene	Chr11:61703310-61704563 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002622	antisense lncRNA gene	Chr11:54775305-54776549 (-)
CAST/EiJ	MGP_CASTEiJ_G0002866	antisense lncRNA gene	Chr11:59459837-59461085 (-)
CBA/J	MGP_CBAJ_G0002892	antisense lncRNA gene	Chr11:64404941-64406238 (-)
DBA/2J	MGP_DBA2J_G0002899	antisense lncRNA gene	Chr11:57188469-57189722 (-)
FVB/NJ	MGP_FVBNJ_G0002917	antisense lncRNA gene	Chr11:56848495-56849747 (-)
LP/J	MGP_LPJ_G0002974	antisense lncRNA gene	Chr11:60407707-60408960 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002905	antisense lncRNA gene	Chr11:65483086-65484338 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003085	antisense lncRNA gene	Chr11:59481844-59483096 (-)
PWK/PhJ	MGP_PWKPhJ_G0002824	antisense lncRNA gene	Chr11:57789537-57790789 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0002771	antisense lncRNA gene	Chr11:59273360-59274600 (-)
WSB/EiJ	MGP_WSBEiJ_G0002895	antisense lncRNA gene	Chr11:59153129-59154381 (-)

Homology

• Gene Tree
  Med9os
  

Human Diseases

• References
  3 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  15 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Gene trapped
  1
• Targeted
  3
• Genomic Mutations
  4 involving Med9os
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  10

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  1

• Ensembl
  ENSMUSG00000085260 (Evidence)
• NCBI Gene
  100504121

Representative Sequences			Length	Strain/Species
genomic	100504121	NCBI Gene Model | MGI Sequence Detail	1256	C57BL/6J
transcript	NR_045273	RefSeq | MGI Sequence Detail	529	C57BL/6

Molecular
Reagents

• All nucleic 10

  cDNA 10

  
  

  Microarray probesets 1

References

• Summaries
  All 25

  Diseases 3

  Phenotypes 15
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:185284 Lacaria M, et al., Enriched rearing improves behavioral responses of an animal model for CNV-based autistic-like traits. Hum Mol Genet. 2012 Jul 15;21(14):3083-96

TSS for Med9os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr108259	Chr11:59839001-59839007 (-)	-31 bp
Tssr108258	Chr11:59838933-59838989 (-)	12 bp
Tssr108257	Chr11:59838905-59838927 (-)	57 bp