1700017L05Rik Gene Detail

Summary

• Symbol
  1700017L05Rik
• Name
  RIKEN cDNA 1700017L05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916620
  NCBI Gene: 69370
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:77613335-77616704 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  248 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916620	lncRNA gene	Chr5:77581834-77621066 (+)
129S1/SvImJ	ENSMUSG00200001400	lncRNA gene	Chr5:73316440-73319799 (+)
A/J	ENSMUSG00195010813	lncRNA gene	Chr5:72618360-72621714 (+)
AKR/J	ENSMUSG00220014949	lncRNA gene	Chr5:72728547-72731910 (+)
BALB/cJ	ENSMUSG00180000072	lncRNA gene	Chr5:72378153-72381518 (+)
C3H/HeJ	ENSMUSG00175004315	lncRNA gene	Chr5:74413394-74416757 (+)
C57BL/6NJ	ENSMUSG00215000469	lncRNA gene	Chr5:73190296-73193659 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006076	lincRNA gene	Chr5:70468082-70472542 (+)
CAST/EiJ	ENSTCUG00005013787	lncRNA gene	Chr5:72160530-72163886 (+)
CBA/J	ENSMUSG00210000618	lncRNA gene	Chr5:73351270-73354633 (+)
DBA/2J	ENSMUSG00185016548	lncRNA gene	Chr5:75181230-75184593 (+)
FVB/NJ	ENSMUSG00205001191	lncRNA gene	Chr5:72139633-72142998 (+)
JF1/MsJ	ENSUMUG00000007187	lncRNA gene	Chr5:79676194-79679538 (+)
LP/J	ENSMUSG00230023141	lncRNA gene	Chr5:79890335-79893692 (+)
NOD/ShiLtJ	ENSMUSG00190007748	lncRNA gene	Chr5:72307597-72310960 (+)
NZO/HlLtJ	ENSMUSG00225035082	lncRNA gene	Chr5:84937427-84940784 (+)
PWK/PhJ	ENSLUMG00010007631	lncRNA gene	Chr5:72236423-72239777 (+)
SPRET/EiJ	ENSMSPG00010010121	lncRNA gene	Chr5:74273546-74276921 (+)
WSB/EiJ	ENSIUOG00005019065	lncRNA gene	Chr5:75148460-75151819 (+)

Homology

• Gene Tree
  1700017L05Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving 1700017L05Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  1

• Ensembl
  ENSMUSG00000107232 (Evidence)
• NCBI Gene
  69370

Representative Sequences			Length	Strain/Species
genomic	69370	NCBI Gene Model | MGI Sequence Detail	3370	C57BL/6J
transcript	NR_131050	RefSeq | MGI Sequence Detail	564	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 15

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700017L05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46796	Chr5:77613309-77613328 (+)	-16 bp
Tssr46797	Chr5:77613330-77613343 (+)	2 bp