1700003E24Rik MGI Mouse Gene Detail - MGI:1916607

Symbol

1700003E24Rik
Name

RIKEN cDNA 1700003E24 gene

Feature Type

lncRNA gene

BioType Conflict
IDs

MGI:1916607
NCBI Gene: 100042663
Alliance

genome feature page

Sequence Map

ChrX:92199827-92200479 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome X, 40.96 cM
Mapping Data

2 experiments

SNPs within 2kb

89 from dbSNP Build 142
Strain Annotations

43

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916607	lncRNA gene	ChrX:92199710-92200492 (+)
129S1/SvImJ	ENSMUSG00200037480	protein coding gene	ChrX:73999464-74000212 (+)
129S1/SvImJ	ENSMUSG00200038301	lncRNA gene	ChrX:73972360-73973079 (+)
129S1/SvImJ	ENSMUSG00200037471	protein coding gene	ChrX:73972339-73973120 (+)
A/J	ENSMUSG00195030100	protein coding gene	ChrX:77787423-77788171 (+)
A/J	ENSMUSG00195030092	protein coding gene	ChrX:77760312-77761093 (+)
A/J	ENSMUSG00195032220	lncRNA gene	ChrX:77760333-77761052 (+)
AKR/J	ENSMUSG00220028875	protein coding gene	ChrX:72512780-72513528 (+)
AKR/J	ENSMUSG00220028869	protein coding gene	ChrX:72485673-72486454 (+)
AKR/J	ENSMUSG00220030967	lncRNA gene	ChrX:72485694-72486413 (+)
BALB/cJ	ENSMUSG00180020674	protein coding gene	ChrX:74426359-74427107 (+)
BALB/cJ	ENSMUSG00180022604	lncRNA gene	ChrX:74399273-74399992 (+)
BALB/cJ	ENSMUSG00180020667	protein coding gene	ChrX:74399252-74400033 (+)
C3H/HeJ	ENSMUSG00175019275	lncRNA gene	ChrX:78122542-78123261 (+)
C3H/HeJ	ENSMUSG00175018542	protein coding gene	ChrX:78122521-78123302 (+)
C3H/HeJ	ENSMUSG00175018549	protein coding gene	ChrX:78149622-78150370 (+)
C57BL/6NJ	ENSMUSG00215014224	protein coding gene	ChrX:74680945-74681693 (+)
C57BL/6NJ	ENSMUSG00215014209	protein coding gene	ChrX:74653838-74654619 (+)
C57BL/6NJ	ENSMUSG00215023910	lncRNA gene	ChrX:74653859-74654578 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006873	lincRNA gene	ChrX:91386720-91387491 (-)
CAST/EiJ	ENSTCUG00005029121	lncRNA gene	ChrX:75668422-75669141 (+)
CBA/J	ENSMUSG00210035331	lncRNA gene	ChrX:74832561-74833280 (+)
CBA/J	ENSMUSG00210033956	protein coding gene	ChrX:74832540-74833321 (+)
CBA/J	ENSMUSG00210033966	protein coding gene	ChrX:74859649-74860397 (+)
DBA/2J	ENSMUSG00185031907	protein coding gene	ChrX:87119580-87120361 (+)
DBA/2J	ENSMUSG00185032613	lncRNA gene	ChrX:87119601-87120320 (+)
DBA/2J	ENSMUSG00185031910	protein coding gene	ChrX:87146703-87147451 (+)
FVB/NJ	ENSMUSG00205026029	lncRNA gene	ChrX:74104021-74104740 (+)
FVB/NJ	ENSMUSG00205023489	protein coding gene	ChrX:74131106-74131854 (+)
FVB/NJ	ENSMUSG00205023471	protein coding gene	ChrX:74104000-74104781 (+)
JF1/MsJ	ENSUMUG00000022936	lncRNA gene	ChrX:107967883-107968602 (+)
LP/J	ENSMUSG00230014381	lncRNA gene	ChrX:93817817-93818536 (+)
LP/J	ENSMUSG00230011502	protein coding gene	ChrX:93817796-93818577 (+)
LP/J	ENSMUSG00230011506	protein coding gene	ChrX:93844920-93845668 (+)
NOD/ShiLtJ	ENSMUSG00190019199	lncRNA gene	ChrX:74017251-74017970 (+)
NOD/ShiLtJ	ENSMUSG00190017875	protein coding gene	ChrX:74017230-74018011 (+)
NOD/ShiLtJ	ENSMUSG00190017877	protein coding gene	ChrX:74044354-74045102 (+)
NZO/HlLtJ	ENSMUSG00225045174	protein coding gene	ChrX:98954444-98955225 (+)
NZO/HlLtJ	ENSMUSG00225045831	lncRNA gene	ChrX:98954465-98955184 (+)
NZO/HlLtJ	ENSMUSG00225045182	protein coding gene	ChrX:98981570-98982318 (+)
PWK/PhJ	ENSLUMG00010040214	lncRNA gene	ChrX:73294640-73295359 (+)
SPRET/EiJ	ENSMSPG00010034388	lncRNA gene	ChrX:77397379-77398101 (+)
WSB/EiJ	ENSIUOG00005041965	lncRNA gene	ChrX:74666054-74666773 (+)

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Gene Tree

1700003E24Rik

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

2

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

53
RefSeq

1

Ensembl

ENSMUSG00000095110 (Evidence)
NCBI Gene

100042663

Representative Sequences				Length	Strain/Species	Flank
	genomic	100042663	NCBI Gene Model \| MGI Sequence Detail	653	C57BL/6J	± kb
	transcript	NR_103799	RefSeq \| MGI Sequence Detail	510	C57BL/6

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All nucleic 3

cDNA 3

Microarray probesets 1

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MGI:3704513, MGI:3709471

Summaries

All 14
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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