1700003P14Rik Gene Detail

Summary

• Symbol
  1700003P14Rik
• Name
  RIKEN cDNA 1700003P14 gene
• Synonyms
  1700030O10Rik, 4930584L06Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1916594
  NCBI Gene: 75890
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:118692704-118725165 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  874 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916594	lncRNA gene	Chr13:118676837-118732071 (+)
129S1/SvImJ	ENSMUSG00200003785	lncRNA gene	Chr13:113173735-113207085 (+)
A/J	ENSMUSG00195001012	lncRNA gene	Chr13:113671294-113701894 (+)
AKR/J	ENSMUSG00220012796	lncRNA gene	Chr13:112121195-112151791 (+)
BALB/cJ	ENSMUSG00180010917	lncRNA gene	Chr13:114273058-114303664 (+)
C3H/HeJ	ENSMUSG00175002342	lncRNA gene	Chr13:114345301-114378647 (+)
C57BL/6NJ	ENSMUSG00215000937	lncRNA gene	Chr13:114354908-114388260 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005012	lincRNA gene	Chr13:111681612-111713370 (+)
CAST/EiJ	ENSTCUG00005002653	lncRNA gene	Chr13:113417165-113447830 (+)
CBA/J	ENSMUSG00210017267	lncRNA gene	Chr13:113670346-113703693 (+)
DBA/2J	ENSMUSG00185029613	lncRNA gene	Chr13:117438216-117471565 (+)
FVB/NJ	ENSMUSG00205001341	lncRNA gene	Chr13:113109015-113139618 (+)
JF1/MsJ	ENSUMUG00000017620	lncRNA gene	Chr13:116885090-116918444 (+)
LP/J	ENSMUSG00230012130	lncRNA gene	Chr13:127636363-127669705 (+)
NOD/ShiLtJ	ENSMUSG00190009698	lncRNA gene	Chr13:113989234-114022662 (+)
NZO/HlLtJ	ENSMUSG00225030991	lncRNA gene	Chr13:119787488-119820833 (+)
PWK/PhJ	ENSLUMG00010008087	lncRNA gene	Chr13:112968695-113002188 (+)
SPRET/EiJ	ENSMSPG00010007066	lncRNA gene	Chr13:114853486-114883498 (+)
WSB/EiJ	ENSIUOG00005013161	lncRNA gene	Chr13:113127270-113157869 (+)

Homology

• Gene Tree
  1700003P14Rik
  

Expression

• Assay Results
  597
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  62
• RefSeq
  1

• Ensembl
  ENSMUSG00000100727 (Evidence)
• NCBI Gene
  75890

Representative Sequences			Length	Strain/Species
genomic	75890	NCBI Gene Model | MGI Sequence Detail	32462	C57BL/6J
transcript	NR_045982	RefSeq | MGI Sequence Detail	994	ZRU/MplStud

Molecular
Reagents

• All nucleic 8

  cDNA 8

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1922824, MGI:1923140

References

• Summaries
  All 10
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700003P14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr121241	Chr13:118692681-118692697 (+)	-15 bp
Tssr121242	Chr13:118692698-118692709 (+)	0 bp