1700012C14Rik Gene Detail

Summary

• Symbol
  1700012C14Rik
• Name
  RIKEN cDNA 1700012C14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916587
  NCBI Gene: 69337
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:30460984-30463312 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 12.52 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  176 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916587	lncRNA gene	Chr6:30459737-30463665 (+)
129S1/SvImJ	ENSMUSG00200036057	lncRNA gene	Chr6:27511571-27514758 (+)
A/J	ENSMUSG00195009436	lncRNA gene	Chr6:27474180-27477370 (+)
AKR/J	ENSMUSG00220003754	lncRNA gene	Chr6:27067250-27070439 (+)
BALB/cJ	ENSMUSG00180022468	lncRNA gene	Chr6:27605821-27609012 (+)
C3H/HeJ	ENSMUSG00175020533	lncRNA gene	Chr6:27469028-27472216 (+)
C57BL/6NJ	ENSMUSG00215028463	lncRNA gene	Chr6:27512394-27515584 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006300	lincRNA gene	Chr6:25322647-25325920 (+)
CAST/EiJ	ENSTCUG00005027737	lncRNA gene	Chr6:27064534-27067729 (+)
CBA/J	ENSMUSG00210004398	lncRNA gene	Chr6:27490181-27493368 (+)
DBA/2J	ENSMUSG00185022236	lncRNA gene	Chr6:27584750-27587937 (+)
FVB/NJ	ENSMUSG00205034222	lncRNA gene	Chr6:27559266-27562453 (+)
JF1/MsJ	ENSUMUG00000041825	lncRNA gene	Chr6:27296315-27299501 (+)
LP/J	ENSMUSG00230030558	lncRNA gene	Chr6:28528139-28531325 (+)
NOD/ShiLtJ	ENSMUSG00190031588	lncRNA gene	Chr6:27353777-27356965 (+)
NZO/HlLtJ	ENSMUSG00225014654	lncRNA gene	Chr6:30489120-30492308 (+)
PWK/PhJ	ENSLUMG00010026194	lncRNA gene	Chr6:27064827-27068013 (+)
SPRET/EiJ	ENSMSPG00010023001	lncRNA gene	Chr6:27490722-27493967 (+)
WSB/EiJ	ENSIUOG00005033828	lncRNA gene	Chr6:27663844-27667035 (+)

Homology

• Gene Tree
  1700012C14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  35
• Gene trapped
  35
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  1

• Ensembl
  ENSMUSG00000085470 (Evidence)
• NCBI Gene
  69337

Representative Sequences			Length	Strain/Species
genomic	69337	NCBI Gene Model | MGI Sequence Detail	2329	C57BL/6J
transcript	NR_131049	RefSeq | MGI Sequence Detail	498	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for 1700012C14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55339	Chr6:30460979-30460988 (+)	0 bp
Tssr55340	Chr6:30460990-30460999 (+)	11 bp