1700010L04Rik Gene Detail

Summary

• Symbol
  1700010L04Rik
• Name
  RIKEN cDNA 1700010L04 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916583
  NCBI Gene: 619808
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:82499585-82510783 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 47.35 cM, cytoband D2
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  306 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916583	lncRNA gene	Chr7:82499585-82599991 (+)
129S1/SvImJ	ENSMUSG00200035623	lncRNA gene	Chr7:69311245-69319466 (+)
A/J	ENSMUSG00195043646	lncRNA gene	Chr7:73749662-73757920 (+)
AKR/J	ENSMUSG00220038776	lncRNA gene	Chr7:67270548-67278808 (+)
BALB/cJ	ENSMUSG00180013508	lncRNA gene	Chr7:70458315-70466571 (+)
C3H/HeJ	ENSMUSG00175036328	lncRNA gene	Chr7:71223315-71231538 (+)
C57BL/6NJ	ENSMUSG00215031164	lncRNA gene	Chr7:70329623-70337875 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006581	lincRNA gene	Chr7:85373211-85380753 (+)
CAST/EiJ	ENSTCUG00005045881	lncRNA gene	Chr7:73779959-73788320 (+)
CBA/J	ENSMUSG00210044016	lncRNA gene	Chr7:71085558-71093782 (+)
DBA/2J	ENSMUSG00185047389	lncRNA gene	Chr7:75396968-75405192 (+)
FVB/NJ	ENSMUSG00205040381	lncRNA gene	Chr7:70975815-70984071 (+)
JF1/MsJ	ENSUMUG00000029156	lncRNA gene	Chr7:80065988-80074242 (+)
LP/J	ENSMUSG00230017002	lncRNA gene	Chr7:81486474-81494699 (+)
NOD/ShiLtJ	ENSMUSG00190032032	lncRNA gene	Chr7:71215265-71223521 (+)
NZO/HlLtJ	ENSMUSG00225043323	lncRNA gene	Chr7:79759618-79767864 (+)
PWK/PhJ	ENSLUMG00010017619	lncRNA gene	Chr7:69670854-69679124 (+)
SPRET/EiJ	ENSMSPG00010026811	lncRNA gene	Chr7:70097546-70105647 (+)
WSB/EiJ	ENSIUOG00005033888	lncRNA gene	Chr7:71566567-71574817 (+)

Homology

• Gene Tree
  1700010L04Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving 1700010L04Rik
• Incidental Mutations
  Mutagenetix
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  604
• Tissues
  5
• cDNA Data
  1
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  54
• RefSeq
  9
• UniProt
  1

• Ensembl
  ENSMUSG00000030636 (Evidence)
• NCBI Gene
  619808

Representative Sequences			Length	Strain/Species
genomic	619808	NCBI Gene Model | MGI Sequence Detail	11199	C57BL/6J
transcript	AK005840	GenBank | ENA | DDBJ | MGI Sequence Detail	785	C57BL/6J
polypeptide	Q9CVZ4	UniProt | EBI | MGI Sequence Detail	112	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  Genomic 2

  cDNA 1

  
  

  Microarray probesets 3

References

• Summaries
  All 27

  Developmental Gene Expression 1

  Phenotypes 11
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:215487 Thompson CL, et al., A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain. Neuron. 2014 Jul 16;83(2):309-23