2610029K11Rik Gene Detail

Summary

• Symbol
  2610029K11Rik
• Name
  RIKEN cDNA 2610029K11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916500
  NCBI Gene: 69250
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:34845840-34847806 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916500	lncRNA gene	Chr17:34845840-34847806 (+)
129S1/SvImJ	ENSMUSG00200051403	lncRNA gene	Chr17:30549741-30550901 (+)
A/J	ENSMUSG00195046735	lncRNA gene	Chr17:31450923-31452083 (+)
AKR/J	ENSMUSG00220052450	lncRNA gene	Chr17:30478541-30479701 (+)
BALB/cJ	ENSMUSG00180046201	lncRNA gene	Chr17:30820920-30822080 (+)
C3H/HeJ	ENSMUSG00175044779	lncRNA gene	Chr17:30364655-30365815 (+)
C57BL/6NJ	ENSMUSG00215053125	lncRNA gene	Chr17:30389912-30391072 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051609	lncRNA gene	Chr17:31409049-31410210 (+)
CBA/J	ENSMUSG00210050947	lncRNA gene	Chr17:30186756-30187916 (+)
DBA/2J	ENSMUSG00185054465	lncRNA gene	Chr17:32840199-32841359 (+)
FVB/NJ	ENSMUSG00205053437	lncRNA gene	Chr17:30708266-30709426 (+)
JF1/MsJ	ENSUMUG00000057197	lncRNA gene	Chr17:32092568-32093727 (+)
LP/J	ENSMUSG00230054792	lncRNA gene	Chr17:33948020-33949180 (+)
NOD/ShiLtJ	ENSMUSG00190053328	lncRNA gene	Chr17:30310761-30311921 (+)
NZO/HlLtJ	ENSMUSG00225054894	lncRNA gene	Chr17:35961414-35962573 (+)
PWK/PhJ	ENSLUMG00010053547	lncRNA gene	Chr17:29918441-29919602 (+)
SPRET/EiJ	ENSMSPG00010051328	lncRNA gene	Chr17:31110155-31111307 (+)
WSB/EiJ	ENSIUOG00005052460	lncRNA gene	Chr17:31037257-31038417 (+)

Homology

• Gene Tree
  2610029K11Rik
  

Expression

• cDNA Data
  5

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000120681 (Evidence)
• NCBI Gene
  69250

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120681	Ensembl Gene Model | MGI Sequence Detail	1967	C57BL/6J
transcript	ENSMUST00000245110	Ensembl | MGI Sequence Detail	1967	Not Applicable

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 9
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 2610029K11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr144083	Chr17:34846618-34846651 (+)	795 bp
Tssr144084	Chr17:34846766-34846812 (+)	949 bp