About   Help   FAQ
Pdzph1 Gene Detail
Summary
  • Symbol
    Pdzph1
  • Name
    PDZ and pleckstrin homology domains 1
  • Synonyms
    2610034M16Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916489
    NCBI Gene: 69239
  • Alliance
    genome feature page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:59185803-59298344 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 30.57 cM, cytoband E1.1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    4193 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916489
 protein coding gene Chr17:59185803-59298370 (-)
129S1/SvImJ ENSMUSG00200016524
 protein coding gene Chr17:54476382-54589012 (-)
A/J ENSMUSG00195006790
 protein coding gene Chr17:55858413-55970962 (-)
AKR/J ENSMUSG00220013309
 protein coding gene Chr17:54907819-55020375 (-)
BALB/cJ ENSMUSG00180005926
 protein coding gene Chr17:55604747-55717290 (-)
C3H/HeJ ENSMUSG00175007322
 protein coding gene Chr17:54923736-55036278 (-)
C57BL/6NJ ENSMUSG00215006754
 protein coding gene Chr17:54552422-54664970 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021818
 protein coding gene Chr17:55353222-55479893 (-)
CAST/EiJ ENSTCUG00005018861
 protein coding gene Chr17:55560464-55674965 (-)
CBA/J ENSMUSG00210026677
 protein coding gene Chr17:54702595-54815130 (-)
DBA/2J ENSMUSG00185008442
 protein coding gene Chr17:57561012-57673562 (-)
FVB/NJ ENSMUSG00205007132
 protein coding gene Chr17:55212908-55325460 (-)
JF1/MsJ ENSUMUG00000015348
 protein coding gene Chr17:57246568-57366852 (-)
LP/J ENSMUSG00230028533
 protein coding gene Chr17:58532942-58645560 (-)
NOD/ShiLtJ ENSMUSG00190009403
 protein coding gene Chr17:54693569-54806191 (-)
NZO/HlLtJ ENSMUSG00225025531
 protein coding gene Chr17:60823310-60935850 (-)
PWK/PhJ ENSLUMG00010009170
 protein coding gene Chr17:54499149-54619616 (-)
SPRET/EiJ ENSMSPG00010004936
 protein coding gene Chr17:54814998-54942694 (-)
WSB/EiJ ENSIUOG00005022999
 protein coding gene Chr17:55563477-55676290 (-)



Homology
more
  • Human Ortholog
    PDZPH1P, PDZ and pleckstrin homology domains 1, pseudogene
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PDZPH1P, PDZ and pleckstrin homology domains 1, pseudogene
  • Links
    NCBI Gene ID: 105379197

  • Chr Location
    chr5:103430533-103526618 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 1 allele in 1 genetic background
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    19
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 69239 NCBI Gene Model | MGI Sequence Detail 112542 C57BL/6J ±  kb
    transcript NM_027001 RefSeq | MGI Sequence Detail 4148 C57BL/6  
    polypeptide NP_081277 RefSeq | MGI Sequence Detail 1233 C57BL/6  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 20
      cDNA 19
      Primer pair 1

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2147022
    References
    more
    • Summaries
      All 25
      Phenotypes 6
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
    Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
    Send questions and comments to User Support.     		last database update
    09/01/2026
    MGI 6.24     		The Jackson Laboratory