2200002J24Rik Gene Detail

Summary

• Symbol
  2200002J24Rik
• Name
  RIKEN cDNA 2200002J24 gene

• Feature Type
  protein coding gene
• IDs
  MGI:1916397
  NCBI Gene: 69147
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:30398351-30399961 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 19.20 cM, cytoband A3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916397	protein coding gene	Chr7:30398311-30409723 (+)
129S1/SvImJ	ENSMUSG00200022062	protein coding gene	Chr7:20144826-20178520 (+)
A/J	no annotation
AKR/J	ENSMUSG00220052860	protein coding gene	Chr7:21623597-21667810 (-)
BALB/cJ	no annotation
C3H/HeJ	ENSMUSG00175036144	protein coding gene	Chr7:21987359-21989231 (+)
C57BL/6NJ	ENSMUSG00215014084	protein coding gene	Chr7:20089499-20091371 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0029539	protein coding gene	Chr7:29923188-29923785 (+)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210026638	protein coding gene	Chr7:21149978-21151850 (+)
DBA/2J	ENSMUSG00185051132	protein coding gene	Chr7:24228769-24230675 (+)
FVB/NJ	ENSMUSG00205016971	protein coding gene	Chr7:20899324-20901198 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230052280	protein coding gene	Chr7:29400121-29400718 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225024516	protein coding gene	Chr7:28239721-28241619 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  2200002J24Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  5
• Gene trapped
  2
• Targeted
  3
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  4 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  2
• GO References
  2

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  8
• UniProt
  2
• CCDS
  CCDS21107.1

• Ensembl
  ENSMUSG00000013083 (Evidence)
• NCBI Gene
  69147

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000013083	Ensembl Gene Model | MGI Sequence Detail	1611	C57BL/6J
transcript	ENSMUST00000207565	Ensembl | MGI Sequence Detail	612	Not Applicable
polypeptide	ENSMUSP00000159561	Ensembl | MGI Sequence Detail	110	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR051423 CD225/Dispanin domain-containing protein
  IPR007593 CD225/Dispanin family

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 3

References

• Summaries
  All 24

  Gene Ontology 2

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for 2200002J24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr65796	Chr7:30398359-30398372 (+)	15 bp