2200002J24Rik Gene Detail

Summary

• Symbol
  2200002J24Rik
• Name
  RIKEN cDNA 2200002J24 gene

• Feature Type
  protein coding gene
• IDs
  MGI:1916397
  NCBI Gene: 69147
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:30398351-30399961 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 19.20 cM, cytoband A3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  49 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916397	protein coding gene	Chr7:30398311-30409723 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0032039	protein coding gene	Chr7:29706495-29707092 (+)
A/J	MGP_AJ_G0032016	protein coding gene	Chr7:28898696-28899293 (+)
AKR/J	MGP_AKRJ_G0031949	protein coding gene	Chr7:29640369-29640966 (+)
BALB/cJ	MGP_BALBcJ_G0032023	protein coding gene	Chr7:29085972-29086569 (+)
C3H/HeJ	MGP_C3HHeJ_G0031742	protein coding gene	Chr7:30095814-30096411 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0032489	protein coding gene	Chr7:30673977-30674574 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0029539	protein coding gene	Chr7:29923188-29923785 (+)
CAST/EiJ	MGP_CASTEiJ_G0031076	protein coding gene	Chr7:23351790-23352387 (+)
CBA/J	MGP_CBAJ_G0031708	protein coding gene	Chr7:32124510-32125107 (+)
DBA/2J	MGP_DBA2J_G0031860	protein coding gene	Chr7:28627002-28627599 (+)
FVB/NJ	MGP_FVBNJ_G0031817	protein coding gene	Chr7:28767245-28767842 (+)
LP/J	MGP_LPJ_G0031941	protein coding gene	Chr7:30018988-30019585 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0031853	protein coding gene	Chr7:31364510-31365107 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0032517	protein coding gene	Chr7:29141045-29141642 (+)
PWK/PhJ	MGP_PWKPhJ_G0030800	protein coding gene	Chr7:23667021-23667618 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0030635	protein coding gene	Chr7:20152899-20153496 (+)
WSB/EiJ	MGP_WSBEiJ_G0031186	protein coding gene	Chr7:29533249-29533846 (+)

Homology

• MGI Vertebrate Homology
  2200002J24Rik stringent orthology
  1 mouse;1 rat;1 zebrafish
  
• Gene Tree
  2200002J24Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  5
• Gene trapped
  2
• Targeted
  3
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  6 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  8
• UniProt
  1
• CCDS
  CCDS21107.1

• Ensembl
  ENSMUSG00000013083 (Evidence)
• NCBI Gene
  69147

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000013083	Ensembl Gene Model | MGI Sequence Detail	1611	C57BL/6J
transcript	ENSMUST00000207565	Ensembl | MGI Sequence Detail	612	Not Applicable
polypeptide	ENSMUSP00000159561	Ensembl | MGI Sequence Detail	110	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR007593 CD225/Dispanin family

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 3

References

• Summaries
  All 22

  Gene Ontology 1

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for 2200002J24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr65796	Chr7:30398359-30398372 (+)	15 bp