1810010H24Rik Gene Detail

Summary

• Symbol
  1810010H24Rik
• Name
  RIKEN cDNA 1810010H24 gene
• Synonyms
  OTTMUSG00000003581

• Feature Type
  protein coding gene
• IDs
  MGI:1916316
  NCBI Gene: 69066
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr11:106916507-106921269 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 70.10 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  7 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916316	protein coding gene	Chr11:106913499-106921269 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003083	antisense lncRNA gene	Chr11:110389007-110391332 (+)
A/J	MGP_AJ_G0003061	antisense lncRNA gene	Chr11:105665370-105667695 (+)
AKR/J	MGP_AKRJ_G0003042	antisense lncRNA gene	Chr11:108816855-108819180 (+)
BALB/cJ	MGP_BALBcJ_G0003048	antisense lncRNA gene	Chr11:106074317-106076642 (+)
C3H/HeJ	MGP_C3HHeJ_G0003004	antisense lncRNA gene	Chr11:109109686-109112011 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003190	antisense lncRNA gene	Chr11:113799860-113802185 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002726	antisense lncRNA gene	Chr11:102933530-102935885 (+)
CAST/EiJ	MGP_CASTEiJ_G0002973	antisense lncRNA gene	Chr11:110201725-110204063 (+)
CBA/J	MGP_CBAJ_G0003001	antisense lncRNA gene	Chr11:118497201-118499526 (+)
DBA/2J	MGP_DBA2J_G0003006	antisense lncRNA gene	Chr11:105139751-105142076 (+)
FVB/NJ	MGP_FVBNJ_G0003026	antisense lncRNA gene	Chr11:104642021-104644346 (+)
LP/J	MGP_LPJ_G0003082	antisense lncRNA gene	Chr11:110832593-110834918 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003014	antisense lncRNA gene	Chr11:117722983-117725308 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003194	antisense lncRNA gene	Chr11:109336009-109338334 (+)
PWK/PhJ	MGP_PWKPhJ_G0002931	antisense lncRNA gene	Chr11:106252656-106255046 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002875	antisense lncRNA gene	Chr11:109094410-109096743 (+)
WSB/EiJ	MGP_WSBEiJ_G0003003	antisense lncRNA gene	Chr11:109298659-109300997 (+)

Homology

• Human Ortholog
  C17orf58, chromosome 17 open reading frame 58

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  C17orf58, chromosome 17 open reading frame 58
  
• Links
  HGNC:27568

  NCBI Gene ID: 284018

  neXtProt AC: NX_Q2M2W7

  UniProt: Q2M2W7

  
  
• Chr Location
  17q24.2; chr17:67991099-67996469 (-)  GRCh38

---

• Alliance of Genome Resources
  1810010H24Rik stringent orthology
  1 human;1 mouse;1 rat
  
• HCOP
  vertebrate homology predictions: C17orf58
• Gene Tree
  1810010H24Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  23
• Endonuclease-mediated
  1
• Gene trapped
  22
• Find Mice (IMSR)
  9 strains or lines available

Expression

• Assay Results
  723
• Tissues
  5
• cDNA Data
  6
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Interactions

• 1810010H24Rik interacts with 16 markers (Mir19b-1, Mir19b-2, Mir29a, ...) View All

Sequences &
Gene Models

• All Sequences
  65
• RefSeq
  26
• UniProt
  3
• CCDS
  CCDS83916.1

• Ensembl
  ENSMUSG00000078607 (Evidence)
• NCBI Gene
  69066

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000078607	Ensembl Gene Model | MGI Sequence Detail	4763	C57BL/6J
transcript	ENSMUST00000140447	Ensembl | MGI Sequence Detail	1677	Not Applicable
polypeptide	ENSMUSP00000147434	Ensembl | MGI Sequence Detail	305	Not Applicable

Protein
Information

• UniProt
  3 Sequences
• Protein Ontology
  PR:000059787 UPF0450 protein C17orf58
  (term hierarchy)
• InterPro Domains
  IPR001134 Netrin domain
  IPR008993 Tissue inhibitor of metalloproteinases-like, OB-fold

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:3713652

References

• Summaries
  All 23

  Developmental Gene Expression 1

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 1810010H24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105564	Chr11:106916413-106916424 (+)	-88 bp
Tssr105565	Chr11:106916430-106916456 (+)	-64 bp
Tssr105566	Chr11:106916679-106916718 (+)	192 bp
Tssr105567	Chr11:106916876-106916899 (+)	381 bp