1810007D17Rik Gene Detail

Summary

• Symbol
  1810007D17Rik
• Name
  RIKEN cDNA 1810007D17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916305
  NCBI Gene: 69055
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr19:58594761-58618185 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 54.42 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  627 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916305	lncRNA gene	Chr19:58594761-58618192 (+)
129S1/SvImJ	ENSMUSG00200015122	lncRNA gene	Chr19:55303915-55327555 (+)
A/J	ENSMUSG00195002644	lncRNA gene	Chr19:55478598-55502239 (+)
AKR/J	ENSMUSG00220018128	lncRNA gene	Chr19:55214648-55238305 (+)
BALB/cJ	ENSMUSG00180020004	lncRNA gene	Chr19:55702370-55726013 (+)
C3H/HeJ	ENSMUSG00175022935	lncRNA gene	Chr19:55240861-55264497 (+)
C57BL/6NJ	ENSMUSG00215026596	lncRNA gene	Chr19:55337292-55360941 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005317	lincRNA gene	Chr19:55073454-55090901 (+)
CAST/EiJ	ENSTCUG00005015607	lncRNA gene	Chr19:54894497-54918133 (+)
CBA/J	ENSMUSG00210021454	lncRNA gene	Chr19:55320943-55344576 (+)
DBA/2J	ENSMUSG00185028400	lncRNA gene	Chr19:55818965-55842601 (+)
FVB/NJ	ENSMUSG00205003701	lncRNA gene	Chr19:54734468-54758110 (+)
JF1/MsJ	ENSUMUG00000040776	lncRNA gene	Chr19:56013127-56043580 (+)
LP/J	ENSMUSG00230027660	lncRNA gene	Chr19:56586401-56610041 (+)
NOD/ShiLtJ	ENSMUSG00190014119	lncRNA gene	Chr19:55267805-55291458 (+)
NZO/HlLtJ	ENSMUSG00225025285	lncRNA gene	Chr19:60206134-60229791 (+)
PWK/PhJ	ENSLUMG00010018716	lncRNA gene	Chr19:55073825-55097606 (+)
SPRET/EiJ	ENSMSPG00010003405	lncRNA gene	Chr19:54923194-54951804 (+)
WSB/EiJ	ENSIUOG00005025368	lncRNA gene	Chr19:54688300-54711965 (+)

Homology

• Gene Tree
  1810007D17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000100001 (Evidence)
• NCBI Gene
  69055

Representative Sequences			Length	Strain/Species
genomic	69055	NCBI Gene Model | MGI Sequence Detail	23425	C57BL/6J
transcript	NR_038136	RefSeq | MGI Sequence Detail	742	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 13

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for 1810007D17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr157255	Chr19:58594756-58594765 (+)	0 bp
Tssr157256	Chr19:58594793-58594802 (+)	37 bp
Tssr157257	Chr19:58594809-58594814 (+)	51 bp