Smim38 Gene Detail

Summary

• Symbol
  Smim38
• Name
  small integral membrane protein 38
• Synonyms
  1810010D01Rik, Gm2572

• Feature Type
  protein coding gene
• IDs
  MGI:1916283
  NCBI Gene: 100040049
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr7:144759562-144761856 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 88.99 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  67 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916283	protein coding gene	Chr7:144759560-144761856 (-)
129S1/SvImJ	ENSMUSG00200046186	protein coding gene	Chr7:131324571-131326826 (-)
A/J	ENSMUSG00195001760	protein coding gene	Chr7:135810566-135812821 (-)
AKR/J	ENSMUSG00220035279	protein coding gene	Chr7:129287839-129290094 (-)
BALB/cJ	ENSMUSG00180000883	protein coding gene	Chr7:132500669-132502924 (-)
C3H/HeJ	ENSMUSG00175003832	protein coding gene	Chr7:133231556-133233811 (-)
C57BL/6NJ	ENSMUSG00215000117	protein coding gene	Chr7:132495045-132497300 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002725	protein coding gene	Chr7:135827095-135829345 (-)
CBA/J	ENSMUSG00210003601	protein coding gene	Chr7:132989057-132991312 (-)
DBA/2J	ENSMUSG00185014397	protein coding gene	Chr7:137267869-137270124 (-)
FVB/NJ	ENSMUSG00205002000	protein coding gene	Chr7:132893512-132895767 (-)
JF1/MsJ	ENSUMUG00000002054	protein coding gene	Chr7:142293495-142295750 (-)
LP/J	ENSMUSG00230007751	protein coding gene	Chr7:143426951-143429206 (-)
NOD/ShiLtJ	ENSMUSG00190003810	protein coding gene	Chr7:133096462-133098717 (-)
NZO/HlLtJ	ENSMUSG00225021168	protein coding gene	Chr7:141639794-141642049 (-)
PWK/PhJ	ENSLUMG00010042566	protein coding gene	Chr7:131463750-131466005 (-)
SPRET/EiJ	ENSMSPG00010000978	protein coding gene	Chr7:133031998-133032754 (-)
WSB/EiJ	ENSIUOG00005000896	protein coding gene	Chr7:133892147-133894402 (-)

Homology

• Human Ortholog
  SMIM38, small integral membrane protein 38

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  SMIM38, small integral membrane protein 38
  
• Links
  HGNC:54074

  NCBI Gene ID: 107984345

  UniProt: A0A286YFK9

  
  
• Chr Location
  chr11:69155478-69162440 (+)  GRCh38

---

• MGI Vertebrate Homology
  Smim38 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: SMIM38
• Gene Tree
  Smim38
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS90363.1

• Ensembl
  ENSMUSG00000109305 (Evidence)
• NCBI Gene
  100040049

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109305	Ensembl Gene Model | MGI Sequence Detail	2295	C57BL/6J
transcript	ENSMUST00000208788	Ensembl | MGI Sequence Detail	889	Not Applicable
polypeptide	ENSMUSP00000149353	Ensembl | MGI Sequence Detail	51	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 4

Other
Accession IDs

MGI:3780739, MGI:6284525

References

• Summaries
  All 14
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for Smim38:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr76018	Chr7:144761835-144761866 (-)	5 bp
Tssr76017	Chr7:144761806-144761823 (-)	41 bp