1500015L24Rik Gene Detail

Summary

• Symbol
  1500015L24Rik
• Name
  RIKEN cDNA 1500015L24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916244
  NCBI Gene: 68994
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:20382652-20400149 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  754 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916244	lncRNA gene	Chr19:20302210-20423185 (+)
129S1/SvImJ	ENSMUSG00200020941	lncRNA gene	Chr19:17004813-17126683 (+)
A/J	ENSMUSG00195018582	lncRNA gene	Chr19:17172383-17295742 (+)
AKR/J	ENSMUSG00220011085	lncRNA gene	Chr19:17141831-17261970 (+)
BALB/cJ	ENSMUSG00180020052	lncRNA gene	Chr19:17528010-17648023 (+)
C3H/HeJ	ENSMUSG00175003880	lncRNA gene	Chr19:16874811-16996689 (+)
C57BL/6NJ	ENSMUSG00215021878	lncRNA gene	Chr19:16909266-17029400 (+)
C57BL/6NJ	ENSMUSG00215015859	protein coding gene	Chr19:16989692-17006927 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005288	lincRNA gene	Chr19:17703124-17722117 (+)
CAST/EiJ	ENSTCUG00005009081	lncRNA gene	Chr19:16760054-16892194 (+)
CBA/J	ENSMUSG00210012935	lncRNA gene	Chr19:17115017-17238392 (+)
DBA/2J	ENSMUSG00185013955	lncRNA gene	Chr19:17505272-17627148 (+)
FVB/NJ	ENSMUSG00205004392	lncRNA gene	Chr19:16938745-17058849 (+)
JF1/MsJ	ENSUMUG00000037939	lncRNA gene	Chr19:17748752-17868708 (+)
LP/J	ENSMUSG00230022535	lncRNA gene	Chr19:18359843-18481688 (+)
NOD/ShiLtJ	ENSMUSG00190021410	lncRNA gene	Chr19:16895881-17015862 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010008903	lncRNA gene	Chr19:17071939-17196638 (+)
SPRET/EiJ	ENSMSPG00010019464	lncRNA gene	Chr19:17076937-17204740 (+)
WSB/EiJ	ENSIUOG00005007439	lncRNA gene	Chr19:16633435-16753466 (+)

Homology

• Gene Tree
  1500015L24Rik
  

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  61
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000094732 (Evidence)
• NCBI Gene
  68994

Representative Sequences			Length	Strain/Species
genomic	68994	NCBI Gene Model | MGI Sequence Detail	17498	C57BL/6J
transcript	NR_045817	RefSeq | MGI Sequence Detail	778	ZRU/MplStud
polypeptide	Q8CF53	UniProt | EBI | MGI Sequence Detail	90	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 12
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 1500015L24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155469	Chr19:20382615-20382625 (+)	-32 bp
Tssr155470	Chr19:20382644-20382655 (+)	-2 bp