1500002C15Rik Gene Detail

Summary

• Symbol
  1500002C15Rik
• Name
  RIKEN cDNA 1500002C15 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916196
  NCBI Gene: 102636313
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:155817006-155819087 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 87.18 cM, cytoband E2
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  125 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916196	lncRNA gene	Chr4:155815007-155820474 (-)
129S1/SvImJ	ENSMUSG00200019722	lncRNA gene	Chr4:146871751-146873927 (-)
A/J	ENSMUSG00195020265	lncRNA gene	Chr4:148537851-148540027 (-)
AKR/J	ENSMUSG00220027224	lncRNA gene	Chr4:148113242-148115418 (-)
BALB/cJ	ENSMUSG00180002761	lncRNA gene	Chr4:146192436-146194612 (-)
C3H/HeJ	ENSMUSG00175019977	lncRNA gene	Chr4:149493041-149495217 (-)
C57BL/6NJ	ENSMUSG00215027346	lncRNA gene	Chr4:148339777-148341959 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003618	antisense lncRNA gene	Chr4:145637271-145639470 (-)
CAST/EiJ	ENSTCUG00005036549	lncRNA gene	Chr4:152198733-152200910 (-)
CBA/J	ENSMUSG00210006183	lncRNA gene	Chr4:148151398-148153574 (-)
DBA/2J	ENSMUSG00185016699	lncRNA gene	Chr4:151708949-151711125 (-)
FVB/NJ	ENSMUSG00205022161	lncRNA gene	Chr4:146606112-146608288 (-)
JF1/MsJ	ENSUMUG00000000421	lncRNA gene	Chr4:154741303-154743487 (-)
LP/J	ENSMUSG00230026326	lncRNA gene	Chr4:158434638-158436820 (-)
LP/J	ENSMUSG00230021708	protein coding gene	Chr4:158434889-158436568 (-)
NOD/ShiLtJ	ENSMUSG00190004161	lncRNA gene	Chr4:147809913-147812089 (-)
NZO/HlLtJ	ENSMUSG00225024724	lncRNA gene	Chr4:162431570-162433746 (-)
PWK/PhJ	ENSLUMG00010028305	lncRNA gene	Chr4:146993732-146995917 (-)
SPRET/EiJ	ENSMSPG00010025720	lncRNA gene	Chr4:148938507-148940698 (-)
WSB/EiJ	ENSIUOG00005006800	lncRNA gene	Chr4:146025415-146027591 (-)

Homology

• Gene Tree
  1500002C15Rik
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000096221 (Evidence)
• NCBI Gene
  102636313

Representative Sequences			Length	Strain/Species
genomic	102636313	NCBI Gene Model | MGI Sequence Detail	2082	C57BL/6J
transcript	NR_190173	RefSeq | MGI Sequence Detail	1536	C57BL/6
polypeptide	Q9DB92	UniProt | EBI | MGI Sequence Detail	155	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 13
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 1500002C15Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr44967	Chr4:155820433-155820444 (-)	-1,352 bp