Abhd13 MGI Mouse Gene Detail - MGI:1916154 - abhydrolase domain containing 13

Symbol

Abhd13
Name

abhydrolase domain containing 13
Synonyms

1110065L07Rik

Feature Type

protein coding gene
IDs

MGI:1916154
NCBI Gene: 68904
Alliance

gene page
Transcription Start Sites

5 TSS

Sequence Map

Chr8:10027717-10042155 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 8, 4.53 cM, cytoband A2
Mapping Data

3 experiments

SNPs within 2kb

75 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916154	protein coding gene	Chr8:10027707-10042155 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0033347	protein coding gene	Chr8:7114650-7129098 (+)
A/J	MGP_AJ_G0033327	protein coding gene	Chr8:6871333-6885781 (+)
AKR/J	MGP_AKRJ_G0033258	protein coding gene	Chr8:7086588-7101036 (+)
BALB/cJ	MGP_BALBcJ_G0033328	protein coding gene	Chr8:7012561-7027009 (+)
C3H/HeJ	MGP_C3HHeJ_G0033041	protein coding gene	Chr8:7245803-7260251 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0033840	protein coding gene	Chr8:7421336-7435784 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0030810	protein coding gene	Chr8:6421034-6435693 (+)
CAST/EiJ	MGP_CASTEiJ_G0032363	protein coding gene	Chr8:6920898-6935351 (+)
CBA/J	MGP_CBAJ_G0033014	protein coding gene	Chr8:7727540-7741988 (+)
DBA/2J	MGP_DBA2J_G0033167	protein coding gene	Chr8:6870939-6885387 (+)
FVB/NJ	MGP_FVBNJ_G0033116	protein coding gene	Chr8:6819838-6834286 (+)
LP/J	MGP_LPJ_G0033261	protein coding gene	Chr8:7032198-7046646 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0033150	protein coding gene	Chr8:8089849-8104297 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0033857	protein coding gene	Chr8:7083214-7097662 (+)
PWK/PhJ	MGP_PWKPhJ_G0032076	protein coding gene	Chr8:6827540-6842104 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0031918	protein coding gene	Chr8:6993978-7008419 (+)
WSB/EiJ	MGP_WSBEiJ_G0032479	protein coding gene	Chr8:7127789-7144481 (+)

Human Ortholog

ABHD13, abhydrolase domain containing 13

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

ABHD13, abhydrolase domain containing 13
Synonyms

bA153I24.2, BEM46L1, C13orf6
Links

HGNC:20293

NCBI Gene ID: 84945

neXtProt AC: NX_Q7L211

UniProt: Q7L211
Chr Location

13q33.3; chr13:108218392-108234243 (+) GRCh38

MGI Vertebrate Homology

Abhd13 stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: ABHD13
Gene Tree

Abhd13

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Phenotype Summary

5 phenotypes from 1 allele in 1 genetic background
7 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

6
Endonuclease-mediated

3
Gene trapped

1
Targeted

2
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

19 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

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All GO Annotations

6
GO References

2

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

709
Tissues

3
cDNA Data

12
Literature Summary

1

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase abhd13

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All Sequences

51
RefSeq

4
UniProt

1
CCDS

CCDS40217.1

Ensembl

ENSMUSG00000040396 (Evidence)
NCBI Gene

68904

			Length	Strain/Species	Flank
genomic	68904	NCBI Gene Model \| MGI Sequence Detail	14439	C57BL/6J	± kb
transcript	NM_026868	RefSeq \| MGI Sequence Detail	5181	C57BL/6
polypeptide	Q80UX8	UniProt \| EBI \| MGI Sequence Detail	337	Not Applicable

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UniProt

1 Sequence
Protein Ontology

PR:000032473 protein ABHD13

(term hierarchy)
EC

3.-.-.-
InterPro Domains

IPR029058 Alpha/Beta hydrolase fold

IPR000073 Alpha/beta hydrolase fold-1

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All nucleic 13

cDNA 12

Primer pair 1

Microarray probesets 8

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MGI:2142563, MGI:2142616

Summaries

All 30

Developmental Gene Expression 1

Gene Ontology 2

Phenotypes 7
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;

TSS for Abhd13:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr76163	Chr8:10027711-10027725 (+)	1 bp
Tssr76164	Chr8:10027733-10027763 (+)	31 bp
Tssr76165	Chr8:10027766-10027788 (+)	60 bp
Tssr76166	Chr8:10027810-10027848 (+)	112 bp
Tssr76167	Chr8:10027851-10027872 (+)	145 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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