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Klhdc9 Gene Detail
Summary
  • Symbol
    Klhdc9
  • Name
    kelch domain containing 9
  • Synonyms
    1190002J23Rik, ESTM31
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916124
    NCBI Gene: 68874
  • Alliance
    genome feature page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:171186017-171188366 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 79.36 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    140 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916124
 protein coding gene Chr1:171186014-171188366 (-)
129S1/SvImJ ENSMUSG00200046625
 protein coding gene Chr1:168668456-168670799 (-)
A/J ENSMUSG00195048301
 protein coding gene Chr1:168019695-168022043 (-)
AKR/J ENSMUSG00220026717
 protein coding gene Chr1:167769966-167772318 (-)
BALB/cJ ENSMUSG00180044360
 protein coding gene Chr1:168308715-168311058 (-)
C3H/HeJ ENSMUSG00175041713
 protein coding gene Chr1:168319786-168322129 (-)
C57BL/6NJ ENSMUSG00215044227
 protein coding gene Chr1:168142847-168145199 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014868
 protein coding gene Chr1:161621363-161623704 (-)
CAST/EiJ ENSTCUG00005043439
 protein coding gene Chr1:166653508-166655861 (-)
CBA/J ENSMUSG00210034808
 protein coding gene Chr1:168196769-168199112 (-)
DBA/2J ENSMUSG00185027589
 protein coding gene Chr1:172510724-172513067 (-)
FVB/NJ ENSMUSG00205035482
 protein coding gene Chr1:167205741-167208085 (-)
JF1/MsJ ENSUMUG00000006723
 protein coding gene Chr1:171639750-171642102 (-)
LP/J ENSMUSG00230025647
 protein coding gene Chr1:172085573-172087916 (-)
NOD/ShiLtJ ENSMUSG00190032694
 protein coding gene Chr1:167991542-167993890 (-)
NZO/HlLtJ ENSMUSG00225004032
 protein coding gene Chr1:175703236-175705584 (-)
PWK/PhJ ENSLUMG00010029811
 protein coding gene Chr1:166986465-166988813 (-)
SPRET/EiJ ENSMSPG00010045807
 protein coding gene Chr1:170520241-170522565 (-)
WSB/EiJ ENSIUOG00005037564
 protein coding gene Chr1:167405913-167408261 (-)



Homology
more
  • Human Ortholog
    KLHDC9, kelch domain containing 9
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    KLHDC9, kelch domain containing 9
  • Synonyms
    KARCA1
  • Links
    NCBI Gene ID: 126823
    UniProt: Q8NEP7

  • Chr Location
    1q23.3; chr1:161098361-161100346 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    3
Molecular Function

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    8
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 68874 NCBI Gene Model | MGI Sequence Detail 2350 C57BL/6J ±  kb
transcript NM_001033039 RefSeq | MGI Sequence Detail 1555 ZRU/MplStud  
polypeptide Q3USL1 UniProt | EBI | MGI Sequence Detail 350 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    Genomic 1
    cDNA 8
    Primer pair 1

    Microarray probesets 2
Other
Accession IDs
less
MGI:1334467
References
more
  • Summaries
    All 34
    Gene Ontology 3
    Phenotypes 9
  • Earliest
    J:52606 Eddleston J, et al., Physical and transcriptional map of a 3-Mb region of mouse chromosome 1 containing the gene for the neural tube defect mutant loop-tail (Lp). Genomics. 1999 Mar 1;56(2):149-59
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory