Lppos Gene Detail

Summary

• Symbol
  Lppos
• Name
  LIM domain containing preferred translocation partner in lipoma, opposite strand
• Synonyms
  1110054M08Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1916091
  NCBI Gene: 68841
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr16:24211306-24212405 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 16.17 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  103 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916091	lncRNA gene	Chr16:24210347-24212454 (-)
129S1/SvImJ	ENSMUSG00200036481	lncRNA gene	Chr16:21214671-21216733 (-)
A/J	ENSMUSG00195029577	lncRNA gene	Chr16:20769222-20771284 (-)
AKR/J	ENSMUSG00220034683	lncRNA gene	Chr16:21088676-21090738 (-)
BALB/cJ	ENSMUSG00180031776	lncRNA gene	Chr16:21009833-21011895 (-)
C3H/HeJ	ENSMUSG00175039611	lncRNA gene	Chr16:21163430-21165492 (-)
C57BL/6NJ	ENSMUSG00215025758	lncRNA gene	Chr16:20881925-20883987 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037917	lncRNA gene	Chr16:21488126-21490178 (-)
CBA/J	ENSMUSG00210040409	lncRNA gene	Chr16:21185027-21187089 (-)
DBA/2J	ENSMUSG00185020199	lncRNA gene	Chr16:21123846-21125908 (-)
FVB/NJ	ENSMUSG00205022627	lncRNA gene	Chr16:21115937-21117999 (-)
JF1/MsJ	ENSUMUG00000041270	lncRNA gene	Chr16:21358962-21361026 (-)
LP/J	ENSMUSG00230034713	lncRNA gene	Chr16:23694029-23696091 (-)
NOD/ShiLtJ	ENSMUSG00190035653	lncRNA gene	Chr16:21255178-21257243 (-)
NZO/HlLtJ	ENSMUSG00225039450	lncRNA gene	Chr16:26945242-26947304 (-)
PWK/PhJ	ENSLUMG00010034365	lncRNA gene	Chr16:21158979-21161043 (-)
SPRET/EiJ	ENSMSPG00010020219	lncRNA gene	Chr16:21054907-21056950 (-)
WSB/EiJ	ENSIUOG00005035500	lncRNA gene	Chr16:21375017-21377082 (-)

Homology

• Gene Tree
  Lppos
  

Gene Ontology
(GO)
Classifications

Expression

• cDNA Data
  14
• Literature Summary
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  1

• Ensembl
  ENSMUSG00000119959 (Evidence)
• NCBI Gene
  68841

Representative Sequences			Length	Strain/Species
genomic	68841	NCBI Gene Model | MGI Sequence Detail	1100	C57BL/6J
transcript	NR_037954	RefSeq | MGI Sequence Detail	876	C57BL/6

Molecular
Reagents

• All nucleic 14

  cDNA 14

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:2146446

References

• Summaries
  All 16

  Developmental Gene Expression 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:356908 Kutter C, et al., Rapid turnover of long noncoding RNAs and the evolution of gene expression. PLoS Genet. 2012;8(7):e1002841

TSS for Lppos:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr140600	Chr16:24212448-24212466 (-)	-52 bp
Tssr140599	Chr16:24212368-24212447 (-)	-3 bp
Tssr140598	Chr16:24212167-24212209 (-)	217 bp