1110046J04Rik Gene Detail

Summary

• Symbol
  1110046J04Rik
• Name
  RIKEN cDNA 1110046J04 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1916058
  NCBI Gene: 68808
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr13:34120015-34144164 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 14.00 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  671 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1916058	lncRNA gene	Chr13:34119550-34144174 (+)
129S1/SvImJ	ENSMUSG00200012991	lncRNA gene	Chr13:31315353-31339978 (+)
A/J	ENSMUSG00195036556	lncRNA gene	Chr13:30404964-30429535 (+)
AKR/J	ENSMUSG00220032036	lncRNA gene	Chr13:30194273-30218845 (+)
BALB/cJ	ENSMUSG00180008338	lncRNA gene	Chr13:30705090-30729658 (+)
C3H/HeJ	ENSMUSG00175013486	lncRNA gene	Chr13:30658059-30682627 (+)
C57BL/6NJ	ENSMUSG00215012662	lncRNA gene	Chr13:30838899-30863525 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002815	antisense lncRNA gene	Chr13:29415136-29435359 (+)
CAST/EiJ	ENSTCUG00005036275	lncRNA gene	Chr13:30742477-30768673 (+)
CBA/J	ENSMUSG00210012171	lncRNA gene	Chr13:30670841-30695407 (+)
DBA/2J	ENSMUSG00185033640	lncRNA gene	Chr13:31489997-31514565 (+)
FVB/NJ	ENSMUSG00205039421	lncRNA gene	Chr13:30371307-30395935 (+)
JF1/MsJ	ENSUMUG00000035809	lncRNA gene	Chr13:31088851-31113503 (+)
LP/J	ENSMUSG00230015487	lncRNA gene	Chr13:40814435-40839004 (+)
NOD/ShiLtJ	ENSMUSG00190012557	lncRNA gene	Chr13:30895931-30920562 (+)
NZO/HlLtJ	ENSMUSG00225035421	lncRNA gene	Chr13:34630108-34654726 (+)
PWK/PhJ	ENSLUMG00010030798	lncRNA gene	Chr13:29927069-29951685 (+)
SPRET/EiJ	ENSMSPG00010027778	lncRNA gene	Chr13:29795694-29820584 (+)
WSB/EiJ	ENSIUOG00005028843	lncRNA gene	Chr13:30061987-30091509 (+)

Homology

• Gene Tree
  1110046J04Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 1110046J04Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  1

• Ensembl
  ENSMUSG00000085457 (Evidence)
• NCBI Gene
  68808

Representative Sequences			Length	Strain/Species
genomic	68808	NCBI Gene Model | MGI Sequence Detail	24150	C57BL/6J
transcript	NR_040707	RefSeq | MGI Sequence Detail	777	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 18

  Phenotypes 8
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:141688 Goldsworthy M, et al., Role of the transcription factor sox4 in insulin secretion and impaired glucose tolerance. Diabetes. 2008 Aug;57(8):2234-44

TSS for 1110046J04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119196	Chr13:34120010-34120058 (+)	19 bp
Tssr119197	Chr13:34137185-34137198 (+)	17,177 bp
Tssr119198	Chr13:34137214-34137225 (+)	17,205 bp