1110025M09Rik Gene Detail

Summary

• Symbol
  1110025M09Rik
• Name
  RIKEN cDNA 1110025M09 gene

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1915885
  NCBI Gene: 68635
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr15:81468375-81469229 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  54 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1915885	lncRNA gene	Chr15:81468372-81470622 (-)
129S1/SvImJ	ENSMUSG00200054133	unclassified gene	Chr15:78575203-78576057 (-)
A/J	ENSMUSG00195052312	unclassified gene	Chr15:78512039-78512893 (-)
AKR/J	ENSMUSG00220053151	unclassified gene	Chr15:78555188-78556042 (-)
BALB/cJ	ENSMUSG00180053370	unclassified gene	Chr15:78389001-78389855 (-)
C3H/HeJ	ENSMUSG00175053343	unclassified gene	Chr15:78699993-78700847 (-)
C57BL/6NJ	ENSMUSG00215052766	unclassified gene	Chr15:78485321-78486175 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000717	unclassified gene	Chr15:75599567-75600431 (-)
CAST/EiJ	ENSTCUG00005047428	unclassified gene	Chr15:78003696-78004550 (-)
CBA/J	ENSMUSG00210049848	unclassified gene	Chr15:78475097-78475951 (-)
DBA/2J	ENSMUSG00185051360	unclassified gene	Chr15:78498317-78499171 (-)
FVB/NJ	ENSMUSG00205052443	unclassified gene	Chr15:78214909-78215763 (-)
JF1/MsJ	ENSUMUG00000056458	unclassified gene	Chr15:78077968-78078822 (-)
LP/J	ENSMUSG00230052713	unclassified gene	Chr15:81822603-81823457 (-)
NOD/ShiLtJ	ENSMUSG00190053709	unclassified gene	Chr15:78492189-78493043 (-)
NZO/HlLtJ	ENSMUSG00225050755	unclassified gene	Chr15:82158497-82159351 (-)
PWK/PhJ	ENSLUMG00010053168	unclassified gene	Chr15:78290142-78290992 (-)
SPRET/EiJ	ENSMSPG00010050474	unclassified gene	Chr15:79936690-79937545 (-)
WSB/EiJ	ENSIUOG00005050735	unclassified gene	Chr15:78567778-78568632 (-)

Homology

• Gene Tree
  1110025M09Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  17 phenotype references
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving 1110025M09Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000103520 (Evidence)
• NCBI Gene
  68635

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103520	Ensembl Gene Model | MGI Sequence Detail	855	C57BL/6J
transcript	AK003925	GenBank | ENA | DDBJ | MGI Sequence Detail	855	C57BL/6J
polypeptide	XP_036015571	RefSeq | MGI Sequence Detail	147	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 27

  Phenotypes 17
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:387680 Ahn B, et al., Disorganization of Transcriptional Regulation and Alteration of Keratin Family Gene Expression in Hairy Ear Mice. Genes (Basel). 2026 Jan 31;17(2)

TSS for 1110025M09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr135492	Chr15:81470671-81470697 (-)	-1,455 bp
Tssr135491	Chr15:81470569-81470587 (-)	-1,349 bp
Tssr135490	Chr15:81470501-81470568 (-)	-1,306 bp
Tssr135489	Chr15:81470252-81470279 (-)	-1,037 bp
Tssr135488	Chr15:81470233-81470246 (-)	-1,011 bp