1110015O18Rik Gene Detail

Summary

• Symbol
  1110015O18Rik
• Name
  RIKEN cDNA 1110015O18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1915766
  NCBI Gene: 100503859
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:4863768-4879971 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 1.96 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  529 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1915766	lncRNA gene	Chr3:4861705-4879977 (+)
129S1/SvImJ	ENSMUSG00200001023	lncRNA gene	Chr3:1548758-1566343 (+)
A/J	ENSMUSG00195001220	lncRNA gene	Chr3:1882740-1900327 (+)
AKR/J	ENSMUSG00220017102	lncRNA gene	Chr3:1855317-1872903 (+)
BALB/cJ	ENSMUSG00180007277	lncRNA gene	Chr3:1875049-1892636 (+)
C3H/HeJ	ENSMUSG00175005088	lncRNA gene	Chr3:1884982-1910226 (+)
C57BL/6NJ	ENSMUSG00215005422	lncRNA gene	Chr3:1863015-1880601 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005561	lincRNA gene	Chr3:1279546-1296853 (+)
CAST/EiJ	ENSTCUG00005000266	lncRNA gene	Chr3:1922538-1940094 (+)
CBA/J	ENSMUSG00210000925	lncRNA gene	Chr3:1872931-1890518 (+)
DBA/2J	ENSMUSG00185000573	lncRNA gene	Chr3:1866442-1884048 (+)
FVB/NJ	ENSMUSG00205006083	lncRNA gene	Chr3:1699940-1717526 (+)
JF1/MsJ	ENSUMUG00000011468	lncRNA gene	Chr3:1822948-1840540 (+)
LP/J	ENSMUSG00230000152	lncRNA gene	Chr3:3788837-3806420 (+)
NOD/ShiLtJ	ENSMUSG00190022966	lncRNA gene	Chr3:1866945-1884530 (+)
NZO/HlLtJ	ENSMUSG00225001622	lncRNA gene	Chr3:6327788-6345371 (+)
PWK/PhJ	ENSLUMG00010008356	lncRNA gene	Chr3:1835663-1853233 (+)
SPRET/EiJ	ENSMSPG00010000121	lncRNA gene	Chr3:1679927-1699564 (+)
WSB/EiJ	ENSIUOG00005000755	lncRNA gene	Chr3:1910954-1935939 (+)

Homology

• Gene Tree
  1110015O18Rik
  

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  44
• RefSeq
  1

• Ensembl
  ENSMUSG00000098659 (Evidence)
• NCBI Gene
  100503859

Representative Sequences			Length	Strain/Species
genomic	100503859	NCBI Gene Model | MGI Sequence Detail	16204	C57BL/6J
transcript	NR_045272	RefSeq | MGI Sequence Detail	1533	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 10
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1110015O18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28263	Chr3:4862397-4862424 (+)	-1,357 bp