1110003F10Rik Gene Detail

Summary

• Symbol
  1110003F10Rik
• Name
  RIKEN cDNA 1110003F10 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1915726
  NCBI Gene: 68476
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:65563094-65563860 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  148 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1915726	lncRNA gene	Chr5:65563094-65563860 (+)
129S1/SvImJ	ENSMUSG00200035837	unclassified gene	Chr5:61180503-61181269 (+)
A/J	ENSMUSG00195000335	unclassified gene	Chr5:60550819-60551585 (+)
AKR/J	ENSMUSG00220007226	unclassified gene	Chr5:60692487-60693253 (+)
BALB/cJ	ENSMUSG00180006680	unclassified gene	Chr5:60336650-60337416 (+)
C3H/HeJ	ENSMUSG00175029231	unclassified gene	Chr5:62371458-62372224 (+)
C57BL/6NJ	ENSMUSG00215006909	unclassified gene	Chr5:61109367-61110133 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001348	unclassified gene	Chr5:58698641-58699604 (+)
CAST/EiJ	ENSTCUG00005000574	unclassified gene	Chr5:60259716-60260482 (+)
CBA/J	ENSMUSG00210023452	unclassified gene	Chr5:61284414-61285180 (+)
DBA/2J	ENSMUSG00185005786	unclassified gene	Chr5:63141923-63142689 (+)
FVB/NJ	ENSMUSG00205011030	unclassified gene	Chr5:60093206-60093972 (+)
JF1/MsJ	ENSUMUG00000021161	unclassified gene	Chr5:67612792-67613558 (+)
LP/J	ENSMUSG00230009233	unclassified gene	Chr5:67793255-67794021 (+)
NOD/ShiLtJ	ENSMUSG00190000787	unclassified gene	Chr5:60275901-60276667 (+)
NZO/HlLtJ	ENSMUSG00225010689	unclassified gene	Chr5:72919317-72920083 (+)
PWK/PhJ	ENSLUMG00010004247	unclassified gene	Chr5:60220311-60221077 (+)
SPRET/EiJ	ENSMSPG00010034986	unclassified gene	Chr5:62038057-62038830 (+)
WSB/EiJ	ENSIUOG00005018505	unclassified gene	Chr5:63232894-63233660 (+)

Homology

• Gene Tree
  1110003F10Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving 1110003F10Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000106291 (Evidence)
• NCBI Gene
  68476

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106291	Ensembl Gene Model | MGI Sequence Detail	767	C57BL/6J
transcript	AK003351	GenBank | ENA | DDBJ | MGI Sequence Detail	768	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 19

  Phenotypes 13
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707