Sox6os MGI Mouse Gene Detail - MGI:1915719 - SRY (sex determining region Y)-box 6, opposite strand

Sequence Map

Chr7:115631214-115631785 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1915719	antisense lncRNA gene	Chr7:115631214-115631785 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004495	antisense lncRNA gene	Chr7:119761857-119762428 (+)
A/J	MGP_AJ_G0004475	antisense lncRNA gene	Chr7:116744445-116745016 (+)
AKR/J	MGP_AKRJ_G0004458	antisense lncRNA gene	Chr7:119672919-119673493 (+)
BALB/cJ	MGP_BALBcJ_G0004460	antisense lncRNA gene	Chr7:116456264-116456838 (+)
C3H/HeJ	MGP_C3HHeJ_G0004409	antisense lncRNA gene	Chr7:119635764-119636335 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004610	antisense lncRNA gene	Chr7:124554279-124554850 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004065	antisense lncRNA gene	Chr7:118258197-118258774 (+)
CAST/EiJ	MGP_CASTEiJ_G0004369	antisense lncRNA gene	Chr7:111322704-111323275 (+)
CBA/J	MGP_CBAJ_G0004404	antisense lncRNA gene	Chr7:128658211-128658782 (+)
DBA/2J	MGP_DBA2J_G0004418	antisense lncRNA gene	Chr7:114801131-114801702 (+)
FVB/NJ	MGP_FVBNJ_G0004435	antisense lncRNA gene	Chr7:114641876-114642447 (+)
LP/J	MGP_LPJ_G0004499	antisense lncRNA gene	Chr7:121243247-121243818 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004424	antisense lncRNA gene	Chr7:130265267-130265838 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004609	antisense lncRNA gene	Chr7:118688865-118689436 (+)
PWK/PhJ	MGP_PWKPhJ_G0004322	antisense lncRNA gene	Chr7:107675499-107676070 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004263	antisense lncRNA gene	Chr7:105405995-105406566 (+)
WSB/EiJ	MGP_WSBEiJ_G0004408	antisense lncRNA gene	Chr7:119561376-119561950 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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			Length	Strain/Species	Flank
genomic	68469	NCBI Gene Model \| MGI Sequence Detail	572	C57BL/6J	± kb
transcript	NR_152104	RefSeq \| MGI Sequence Detail	420	C57BL/6
polypeptide	Q9CTI5	UniProt \| EBI \| MGI Sequence Detail	104	Not Applicable

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Summaries

All 19

Phenotypes 6
Earliest

J:61682 Hagiwara N, et al., Sox6 is a candidate gene for p100H myopathy, heart block, and sudden neonatal death. Proc Natl Acad Sci U S A. 2000 Apr 11;97(8):4180-5
Latest

J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for Sox6os:

(View these features in JBrowse)

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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