Sox6os Gene Detail

Summary

• Symbol
  Sox6os
• Name
  SRY (sex determining region Y)-box 6, opposite strand
• Synonyms
  1110006G14Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1915719
  NCBI Gene: 68469
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr7:115631214-115631785 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 61.42 cM, cytoband F3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  31 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1915719	antisense lncRNA gene	Chr7:115630987-115631787 (+)
129S1/SvImJ	ENSMUSG00200022830	lncRNA gene	Chr7:102166457-102167028 (+)
A/J	ENSMUSG00195040778	lncRNA gene	Chr7:106677778-106678349 (+)
AKR/J	ENSMUSG00220041205	lncRNA gene	Chr7:100079654-100080228 (+)
BALB/cJ	ENSMUSG00180034389	lncRNA gene	Chr7:103333779-103334353 (+)
C3H/HeJ	ENSMUSG00175027309	lncRNA gene	Chr7:103956530-103957101 (+)
C57BL/6NJ	ENSMUSG00215042201	lncRNA gene	Chr7:103295282-103295853 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004065	antisense lncRNA gene	Chr7:118258197-118258774 (+)
CAST/EiJ	ENSTCUG00005044630	lncRNA gene	Chr7:106631431-106632002 (+)
CBA/J	ENSMUSG00210025103	lncRNA gene	Chr7:103783006-103783577 (+)
DBA/2J	ENSMUSG00185022681	lncRNA gene	Chr7:108133508-108134079 (+)
FVB/NJ	ENSMUSG00205050117	lncRNA gene	Chr7:103755731-103756302 (+)
JF1/MsJ	ENSUMUG00000052498	lncRNA gene	Chr7:113198242-113198813 (+)
LP/J	ENSMUSG00230038435	lncRNA gene	Chr7:114252493-114253064 (+)
NOD/ShiLtJ	ENSMUSG00190029291	lncRNA gene	Chr7:103966561-103967132 (+)
NZO/HlLtJ	ENSMUSG00225040200	lncRNA gene	Chr7:112490399-112490970 (+)
PWK/PhJ	ENSLUMG00010013797	lncRNA gene	Chr7:102344252-102344823 (+)
SPRET/EiJ	ENSMSPG00010010120	lncRNA gene	Chr7:103548987-103549558 (+)
WSB/EiJ	ENSIUOG00005012762	lncRNA gene	Chr7:104619609-104620183 (+)

Homology

• Gene Tree
  Sox6os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Sox6os
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000030664 (Evidence)
• NCBI Gene
  68469

Representative Sequences			Length	Strain/Species
genomic	68469	NCBI Gene Model | MGI Sequence Detail	572	C57BL/6J
transcript	NR_152104	RefSeq | MGI Sequence Detail	420	C57BL/6
polypeptide	Q9CTI5	UniProt | EBI | MGI Sequence Detail	104	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 20

  Phenotypes 6
• Earliest
  J:61682 Hagiwara N, et al., Sox6 is a candidate gene for p100H myopathy, heart block, and sudden neonatal death. Proc Natl Acad Sci U S A. 2000 Apr 11;97(8):4180-5
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for Sox6os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68686	Chr7:115631155-115631167 (+)	-53 bp
Tssr68687	Chr7:115631231-115631244 (+)	24 bp