0610043K17Rik Gene Detail

Summary

• Symbol
  0610043K17Rik
• Name
  RIKEN cDNA 0610043K17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1915650
  NCBI Gene: 68400
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:101210980-101256382 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 46.68 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1388 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1915650	lncRNA gene	Chr4:101210980-101257003 (+)
129S1/SvImJ	ENSMUSG00200030980	lncRNA gene	Chr4:96199368-96244773 (+)
A/J	ENSMUSG00195008958	lncRNA gene	Chr4:96748078-96793547 (+)
AKR/J	ENSMUSG00220006820	lncRNA gene	Chr4:96193029-96238759 (+)
BALB/cJ	ENSMUSG00180033550	lncRNA gene	Chr4:95678256-95723716 (+)
C3H/HeJ	ENSMUSG00175015516	lncRNA gene	Chr4:96667110-96712563 (+)
C57BL/6NJ	ENSMUSG00215020184	lncRNA gene	Chr4:96587100-96632512 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005890	lincRNA gene	Chr4:93377363-93417860 (+)
CAST/EiJ	ENSTCUG00005007804	lncRNA gene	Chr4:95860044-95906097 (+)
CBA/J	ENSMUSG00210029773	lncRNA gene	Chr4:96209467-96254925 (+)
DBA/2J	ENSMUSG00185022734	lncRNA gene	Chr4:96983678-97029079 (+)
FVB/NJ	ENSMUSG00205016475	lncRNA gene	Chr4:95177788-95223516 (+)
JF1/MsJ	ENSUMUG00000043300	lncRNA gene	Chr4:97077248-97122092 (+)
LP/J	ENSMUSG00230023383	lncRNA gene	Chr4:100288846-100334245 (+)
NOD/ShiLtJ	ENSMUSG00190035187	lncRNA gene	Chr4:95645703-95691104 (+)
NZO/HlLtJ	ENSMUSG00225033043	lncRNA gene	Chr4:105420809-105466517 (+)
PWK/PhJ	ENSLUMG00010018696	lncRNA gene	Chr4:94768623-94814975 (+)
SPRET/EiJ	ENSMSPG00010008667	lncRNA gene	Chr4:96996140-97040960 (+)
WSB/EiJ	ENSIUOG00005003193	lncRNA gene	Chr4:95955989-96001446 (+)

Homology

• Gene Tree
  0610043K17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  35
• Chemically induced (other)
  2
• Gene trapped
  31
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving 0610043K17Rik
• Find Mice (IMSR)
  29 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  49
• RefSeq
  1

• Ensembl
  ENSMUSG00000087361 (Evidence)
• NCBI Gene
  68400

Representative Sequences			Length	Strain/Species
genomic	68400	NCBI Gene Model | MGI Sequence Detail	45403	C57BL/6J
transcript	NR_040640	RefSeq | MGI Sequence Detail	618	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 19

  Phenotypes 9
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:369590 Wang B, et al., Somatosensory neurons express specific sets of lincRNAs, and lincRNA CLAP promotes itch sensation in mice. EMBO Rep. 2023 Feb 6;24(2):e54313

TSS for 0610043K17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37988	Chr4:101213057-101213080 (+)	2,089 bp