0610025J13Rik Gene Detail

Summary

• Symbol
  0610025J13Rik
• Name
  RIKEN cDNA 0610025J13 gene
• Synonyms
  B430316H17Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1915618
  NCBI Gene: 78687
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:98209593-98220197 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 45.60 cM, cytoband C6
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  404 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1915618	lncRNA gene	Chr4:98208832-98220971 (+)
129S1/SvImJ	ENSMUSG00200031218	lncRNA gene	Chr4:93186328-93196592 (+)
A/J	ENSMUSG00195008464	lncRNA gene	Chr4:93716172-93726575 (+)
AKR/J	ENSMUSG00220006990	lncRNA gene	Chr4:93194601-93204984 (+)
BALB/cJ	ENSMUSG00180034500	lncRNA gene	Chr4:92661605-92672003 (+)
C3H/HeJ	ENSMUSG00175015384	lncRNA gene	Chr4:93623864-93634265 (+)
C57BL/6NJ	ENSMUSG00215022196	lncRNA gene	Chr4:93583100-93593494 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003523	antisense lncRNA gene	Chr4:90446745-90457246 (+)
CAST/EiJ	ENSTCUG00005007760	lncRNA gene	Chr4:92912995-92923254 (+)
CBA/J	ENSMUSG00210029990	lncRNA gene	Chr4:93189422-93199815 (+)
DBA/2J	ENSMUSG00185022564	lncRNA gene	Chr4:93977955-93988215 (+)
FVB/NJ	ENSMUSG00205015986	lncRNA gene	Chr4:92190424-92200803 (+)
JF1/MsJ	ENSUMUG00000044018	lncRNA gene	Chr4:94091889-94102098 (+)
LP/J	ENSMUSG00230022844	lncRNA gene	Chr4:97295911-97306179 (+)
NOD/ShiLtJ	ENSMUSG00190032590	lncRNA gene	Chr4:92659222-92669486 (+)
NZO/HlLtJ	ENSMUSG00225003741	lncRNA gene	Chr4:102438718-102448974 (+)
PWK/PhJ	ENSLUMG00010018744	lncRNA gene	Chr4:91815321-91825539 (+)
SPRET/EiJ	ENSMSPG00010008507	lncRNA gene	Chr4:94046962-94055291 (+)
WSB/EiJ	ENSIUOG00005003263	lncRNA gene	Chr4:92987914-92998152 (+)

Homology

• Gene Tree
  0610025J13Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving 0610025J13Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  3
• UniProt
  2

• Ensembl
  ENSMUSG00000046683 (Evidence)
• NCBI Gene
  78687

Representative Sequences			Length	Strain/Species
genomic	78687	NCBI Gene Model | MGI Sequence Detail	10605	C57BL/6J
transcript	AK002663	GenBank | ENA | DDBJ | MGI Sequence Detail	708	C57BL/6J
polypeptide	Q9CTM8	UniProt | EBI | MGI Sequence Detail	128	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 4

  Genomic 2

  cDNA 2

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1925937

References

• Summaries
  All 20

  Phenotypes 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582