C630043F03Rik Gene Detail

Summary

• Symbol
  C630043F03Rik
• Name
  RIKEN cDNA C630043F03 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1915535
  NCBI Gene: 68285
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:72119481-72122167 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 36.06 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  30 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1915535	lncRNA gene	Chr4:72119481-72133589 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015550	unclassified non-coding RNA gene	Chr4:71411772-71426600 (+)
A/J	MGP_AJ_G0015527	unclassified non-coding RNA gene	Chr4:68985861-68999841 (+)
AKR/J	MGP_AKRJ_G0015491	unclassified non-coding RNA gene	Chr4:70780293-70794277 (+)
BALB/cJ	MGP_BALBcJ_G0015489	unclassified non-coding RNA gene	Chr4:69143501-69157521 (+)
C3H/HeJ	MGP_C3HHeJ_G0015312	unclassified non-coding RNA gene	Chr4:71319055-71333021 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015943	unclassified non-coding RNA gene	Chr4:73961846-73976970 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013678	unclassified non-coding RNA gene	Chr4:65606839-65620434 (+)
CAST/EiJ	MGP_CASTEiJ_G0014866	unclassified non-coding RNA gene	Chr4:69295855-69312489 (+)
CBA/J	MGP_CBAJ_G0015293	unclassified non-coding RNA gene	Chr4:76366115-76380150 (+)
DBA/2J	MGP_DBA2J_G0015387	unclassified non-coding RNA gene	Chr4:68738599-68752597 (+)
FVB/NJ	MGP_FVBNJ_G0015394	unclassified non-coding RNA gene	Chr4:67844397-67858379 (+)
LP/J	MGP_LPJ_G0015466	unclassified non-coding RNA gene	Chr4:71772653-71786632 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015418	unclassified non-coding RNA gene	Chr4:80160481-80175454 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015984	unclassified non-coding RNA gene	Chr4:70844696-70858688 (+)
PWK/PhJ	MGP_PWKPhJ_G0014652	unclassified non-coding RNA gene	Chr4:67189094-67203442 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014440	unclassified non-coding RNA gene	Chr4:68358469-68372457 (+)
WSB/EiJ	MGP_WSBEiJ_G0014972	unclassified non-coding RNA gene	Chr4:70920339-70934331 (+)

Homology

• Gene Tree
  C630043F03Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving C630043F03Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  8
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  1

• Ensembl
  ENSMUSG00000084910 (Evidence)
• NCBI Gene
  68285

Representative Sequences			Length	Strain/Species
genomic	68285	NCBI Gene Model | MGI Sequence Detail	2687	C57BL/6J
transcript	NR_027923	RefSeq | MGI Sequence Detail	2687	C57BL/6

Molecular
Reagents

• All nucleic 8

  cDNA 8

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:2140388

References

• Summaries
  All 16

  Developmental Gene Expression 1

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:239387 Stafford DA, et al., Deletion of the sclerotome-enriched lncRNA PEAT augments ribosomal protein expression. Proc Natl Acad Sci U S A. 2017 Jan 03;114(1):101-106

TSS for C630043F03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37630	Chr4:72119495-72119602 (+)	68 bp