2410080I02Rik Gene Detail

Summary

• Symbol
  2410080I02Rik
• Name
  RIKEN cDNA 2410080I02 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1915498
  NCBI Gene: 102636896
• Alliance
  genome feature page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr19:23111859-23114475 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1915498	lncRNA gene	Chr19:23109787-23115525 (+)
129S1/SvImJ	ENSMUSG00200021143	lncRNA gene	Chr19:19843132-19843837 (+)
A/J	ENSMUSG00195018110	lncRNA gene	Chr19:19977250-19977955 (+)
AKR/J	ENSMUSG00220010657	lncRNA gene	Chr19:19994738-19995443 (+)
BALB/cJ	ENSMUSG00180013624	lncRNA gene	Chr19:20323956-20324661 (+)
C3H/HeJ	ENSMUSG00175004063	lncRNA gene	Chr19:19686322-19687027 (+)
C57BL/6NJ	ENSMUSG00215025958	lncRNA gene	Chr19:19723318-19724023 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008902	lncRNA gene	Chr19:19579942-19580647 (+)
CBA/J	ENSMUSG00210012922	lncRNA gene	Chr19:19917703-19918408 (+)
DBA/2J	ENSMUSG00185026708	lncRNA gene	Chr19:20303956-20304661 (+)
FVB/NJ	ENSMUSG00205003943	lncRNA gene	Chr19:19751980-19752685 (+)
JF1/MsJ	ENSUMUG00000038008	lncRNA gene	Chr19:20530581-20531286 (+)
LP/J	ENSMUSG00230029124	lncRNA gene	Chr19:21153052-21153757 (+)
NOD/ShiLtJ	ENSMUSG00190021117	lncRNA gene	Chr19:19678712-19679417 (+)
NZO/HlLtJ	ENSMUSG00225034681	lncRNA gene	Chr19:24896441-24897146 (+)
PWK/PhJ	ENSLUMG00010008973	lncRNA gene	Chr19:19860140-19860845 (+)
SPRET/EiJ	ENSMSPG00010019228	lncRNA gene	Chr19:19842156-19842861 (+)
WSB/EiJ	ENSIUOG00005007358	lncRNA gene	Chr19:19397873-19398578 (+)

Homology

• Gene Tree
  2410080I02Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  12
• Gene trapped
  12
• Find Mice (IMSR)
  5 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• cDNA Data
  4

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000120380 (Evidence)
• NCBI Gene
  102636896

Representative Sequences			Length	Strain/Species
genomic	102636896	NCBI Gene Model | MGI Sequence Detail	2617	C57BL/6J
transcript	AK145685	GenBank | ENA | DDBJ | MGI Sequence Detail	1250	C57BL/6J
polypeptide	Q8BG96	UniProt | EBI | MGI Sequence Detail	109	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

Other
Accession IDs

MGI:7337186

References

• Summaries
  All 16

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 2410080I02Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155571	Chr19:23111173-23111180 (+)	-682 bp
Tssr155572	Chr19:23111857-23111862 (+)	1 bp
Tssr155573	Chr19:23112474-23112494 (+)	625 bp
Tssr155574	Chr19:23113451-23113461 (+)	1,597 bp
Tssr155575	Chr19:23114091-23114099 (+)	2,236 bp
Tssr155576	Chr19:23114101-23114108 (+)	2,246 bp
Tssr155577	Chr19:23114229-23114241 (+)	2,376 bp