1700039O17Rik Gene Detail

Summary

• Symbol
  1700039O17Rik
• Name
  RIKEN cDNA 1700039O17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1915458
  NCBI Gene: 68208
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:173132987-173148613 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  660 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1915458	lncRNA gene	Chr2:173132987-173148613 (+)
129S1/SvImJ	ENSMUSG00200041284	lncRNA gene	Chr2:170067850-170068198 (+)
A/J	ENSMUSG00195026503	lncRNA gene	Chr2:170396298-170396646 (+)
AKR/J	ENSMUSG00220034298	lncRNA gene	Chr2:169691939-169692287 (+)
BALB/cJ	ENSMUSG00180038516	lncRNA gene	Chr2:169830390-169830738 (+)
C3H/HeJ	ENSMUSG00175043592	lncRNA gene	Chr2:170600049-170600397 (+)
C57BL/6NJ	ENSMUSG00215031879	lncRNA gene	Chr2:170028975-170029323 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210044089	lncRNA gene	Chr2:170510331-170510679 (+)
DBA/2J	ENSMUSG00185026532	lncRNA gene	Chr2:170223915-170224263 (+)
FVB/NJ	ENSMUSG00205027820	lncRNA gene	Chr2:169280516-169280864 (+)
JF1/MsJ	ENSUMUG00000045539	lncRNA gene	Chr2:169911599-169911947 (+)
LP/J	ENSMUSG00230012396	lncRNA gene	Chr2:171804202-171804550 (+)
NOD/ShiLtJ	ENSMUSG00190044900	lncRNA gene	Chr2:169909124-169909472 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010040379	lncRNA gene	Chr2:169812274-169812622 (+)
SPRET/EiJ	ENSMSPG00010030854	lncRNA gene	Chr2:172566987-172567334 (+)
WSB/EiJ	ENSIUOG00005024975	lncRNA gene	Chr2:169652664-169653012 (+)

Homology

• Gene Tree
  1700039O17Rik
  

Expression

• cDNA Data
  4

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000121269 (Evidence)
• NCBI Gene
  68208

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121269	Ensembl Gene Model | MGI Sequence Detail	15627	C57BL/6J
transcript	ENSMUST00000299257	Ensembl | MGI Sequence Detail	1343	Not Applicable

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700039O17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr22054	Chr2:173133020-173133051 (+)	49 bp