4632427E13Rik Gene Detail

Summary

• Symbol
  4632427E13Rik
• Name
  RIKEN cDNA 4632427E13 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1915436
  NCBI Gene: 666737
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr7:92389914-92390667 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 51.59 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  64 from dbSNP Build 142
• Strain Annotations
  25

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1915436	lncRNA gene	Chr7:92381862-92390736 (-)
129S1/SvImJ	ENSMUSG00200026670	protein coding gene	Chr7:79164032-79175609 (-)
129S1/SvImJ	ENSMUSG00200028186	lncRNA gene	Chr7:79168252-79175594 (-)
A/J	ENSMUSG00195039190	lncRNA gene	Chr7:83680270-83687613 (-)
A/J	ENSMUSG00195036037	protein coding gene	Chr7:83676045-83687628 (-)
AKR/J	ENSMUSG00220043639	lncRNA gene	Chr7:77146312-77153655 (-)
AKR/J	ENSMUSG00220040623	protein coding gene	Chr7:77142188-77153670 (-)
BALB/cJ	ENSMUSG00180037845	lncRNA gene	Chr7:80348604-80355947 (-)
BALB/cJ	ENSMUSG00180036091	protein coding gene	Chr7:80344379-80355962 (-)
C3H/HeJ	ENSMUSG00175025034	lncRNA gene	Chr7:81051180-81058526 (-)
C57BL/6NJ	ENSMUSG00215026833	protein coding gene	Chr7:80219654-80231240 (-)
C57BL/6NJ	ENSMUSG00215028608	lncRNA gene	Chr7:80223881-80231225 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004049	antisense lncRNA gene	Chr7:95703417-95711006 (-)
CAST/EiJ	ENSTCUG00005034304	lncRNA gene	Chr7:83637543-83644884 (-)
CBA/J	ENSMUSG00210025352	lncRNA gene	Chr7:80893028-80900374 (-)
DBA/2J	ENSMUSG00185032340	lncRNA gene	Chr7:85222805-85230151 (-)
FVB/NJ	ENSMUSG00205036639	lncRNA gene	Chr7:80847868-80855215 (-)
JF1/MsJ	ENSUMUG00000025848	lncRNA gene	Chr7:90171747-90179303 (-)
LP/J	ENSMUSG00230045438	lncRNA gene	Chr7:91311828-91319174 (-)
NOD/ShiLtJ	ENSMUSG00190018419	protein coding gene	Chr7:81095504-81107087 (-)
NOD/ShiLtJ	ENSMUSG00190022546	lncRNA gene	Chr7:81099729-81107072 (-)
NZO/HlLtJ	ENSMUSG00225011859	lncRNA gene	Chr7:89586872-89594218 (-)
PWK/PhJ	ENSLUMG00010040650	lncRNA gene	Chr7:79380981-79388553 (-)
SPRET/EiJ	ENSMSPG00010012852	lncRNA gene	Chr7:80491409-80498721 (-)
WSB/EiJ	ENSIUOG00005010919	lncRNA gene	Chr7:81532333-81539677 (-)

Homology

• Gene Tree
  4632427E13Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  25 phenotype references
  

• All Mutations and Alleles
  16
• Chemically induced (other)
  1
• Gene trapped
  13
• Radiation induced
  2
• Genomic Mutations
  3 involving 4632427E13Rik
• Find Mice (IMSR)
  13 strains or lines available

Expression

• Assay Results
  599
• Tissues
  2
• cDNA Data
  13
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  68
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000074024 (Evidence)
• NCBI Gene
  666737

Representative Sequences			Length	Strain/Species
genomic	666737	NCBI Gene Model | MGI Sequence Detail	754	C57BL/6J
transcript	NR_015510	RefSeq | MGI Sequence Detail	669	C57BL/6
polypeptide	Q3UL04	UniProt | EBI | MGI Sequence Detail	89	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 13

  cDNA 13

  
  

  Microarray probesets 4

Other
Accession IDs

MGI:2142114

References

• Summaries
  All 42

  Developmental Gene Expression 1

  Phenotypes 25
• Earliest
  J:141526 Russell LB, et al., Analysis of the albino-locus region of the mouse. III. Time of death of prenatal lethals. Genetics. 1979 May;92(1):205-13
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 4632427E13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr73556	Chr7:92390656-92390681 (-)	-2 bp
Tssr73555	Chr7:92390625-92390652 (-)	28 bp
Tssr73554	Chr7:92390611-92390618 (-)	52 bp