Fam120aos Gene Detail

Summary

• Symbol
  Fam120aos
• Name
  family with sequence similarity 120A, opposite strand
• Synonyms
  C030044B11Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1915378
  NCBI Gene: 68128
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr13:49121809-49123482 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 25.04 cM, cytoband B1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  91 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1915378	lncRNA gene	Chr13:49121588-49123482 (+)
129S1/SvImJ	ENSMUSG00200036493	lncRNA gene	Chr13:46400587-46402163 (+)
A/J	ENSMUSG00195029588	lncRNA gene	Chr13:45450176-45451752 (+)
AKR/J	ENSMUSG00220009713	lncRNA gene	Chr13:45260941-45262519 (+)
BALB/cJ	ENSMUSG00180008937	lncRNA gene	Chr13:45752450-45754026 (+)
C3H/HeJ	ENSMUSG00175028807	lncRNA gene	Chr13:45722929-45724505 (+)
C57BL/6NJ	ENSMUSG00215007860	lncRNA gene	Chr13:45869486-45871062 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033106	lncRNA gene	Chr13:45782883-45784421 (+)
CBA/J	ENSMUSG00210028940	lncRNA gene	Chr13:45728311-45729888 (+)
DBA/2J	ENSMUSG00185032414	lncRNA gene	Chr13:46542322-46543898 (+)
FVB/NJ	ENSMUSG00205012685	lncRNA gene	Chr13:45505250-45506827 (+)
JF1/MsJ	ENSUMUG00000019665	lncRNA gene	Chr13:46070808-46072385 (+)
LP/J	ENSMUSG00230029793	lncRNA gene	Chr13:55863143-55864719 (+)
NOD/ShiLtJ	ENSMUSG00190012381	lncRNA gene	Chr13:45947195-45948771 (+)
NZO/HlLtJ	ENSMUSG00225036641	lncRNA gene	Chr13:49613514-49615090 (+)
PWK/PhJ	ENSLUMG00010022179	lncRNA gene	Chr13:44926293-44927869 (+)
SPRET/EiJ	ENSMSPG00010030311	lncRNA gene	Chr13:45053829-45055360 (+)
WSB/EiJ	ENSIUOG00005029088	lncRNA gene	Chr13:45084517-45086095 (+)

Homology

• Gene Tree
  Fam120aos
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  13
• Chemically induced (other)
  1
• Gene trapped
  12
• Genomic Mutations
  1 involving Fam120aos
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• cDNA Data
  20

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000120113 (Evidence)
• NCBI Gene
  68128

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120113	Ensembl Gene Model | MGI Sequence Detail	1674	C57BL/6J
transcript	ENSMUST00000345541	Ensembl | MGI Sequence Detail	1507	Not Applicable

Molecular
Reagents

• All nucleic 20

  cDNA 20

  
  

  Microarray probesets 2

References

• Summaries
  All 18

  Phenotypes 6
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:137511 Lin Q, et al., Mutagenesis of diploid mammalian genes by gene entrapment. Nucleic Acids Res. 2006;34(20):e139

TSS for Fam120aos:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119671	Chr13:49121637-49121692 (+)	-144 bp
Tssr119672	Chr13:49121800-49121831 (+)	7 bp
Tssr119673	Chr13:49121843-49121906 (+)	66 bp
Tssr119674	Chr13:49122376-49122380 (+)	569 bp
Tssr119675	Chr13:49122487-49122499 (+)	684 bp
Tssr119676	Chr13:49122564-49122587 (+)	767 bp