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Lce1f Gene Detail
Summary
  • Symbol
    Lce1f
  • Name
    late cornified envelope 1F
  • Synonyms
    1110055J05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915078
    NCBI Gene: 67828
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:92626003-92627657 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 40.14 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    50 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915078
 protein coding gene Chr3:92625992-92627657 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027512
 protein coding gene Chr3:93174009-93176481 (-)
A/J MGP_AJ_G0027479
 protein coding gene Chr3:90243261-90245072 (-)
AKR/J MGP_AKRJ_G0027444
 protein coding gene Chr3:92352608-92356154 (-)
BALB/cJ MGP_BALBcJ_G0027487
 protein coding gene Chr3:90050414-90052079 (-)
C3H/HeJ MGP_C3HHeJ_G0027227
 protein coding gene Chr3:92575236-92576931 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027931
 protein coding gene Chr3:96720929-96723390 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025279
 protein coding gene Chr3:86873516-86875122 (-)
CAST/EiJ MGP_CASTEiJ_G0026673
 protein coding gene Chr3:91995369-91996949 (-)
CBA/J MGP_CBAJ_G0027201
 protein coding gene Chr3:100043733-100045398 (-)
DBA/2J MGP_DBA2J_G0027339
 protein coding gene Chr3:89570216-89571881 (-)
FVB/NJ MGP_FVBNJ_G0027307
 protein coding gene Chr3:87733828-87735493 (-)
LP/J MGP_LPJ_G0027447
 protein coding gene Chr3:94391127-94393254 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027332
 protein coding gene Chr3:106328079-106329774 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0027990
 protein coding gene Chr3:92087455-92090552 (-)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0026224
 protein coding gene Chr3:90424749-90426154 (-)
WSB/EiJ MGP_WSBEiJ_G0026756
 protein coding gene Chr3:92466328-92468023 (-)



Homology
more
  • Human Ortholog
    LCE1A, late cornified envelope 1A
  • Vertebrate Orthologs
    6
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LCE1A, late cornified envelope 1A
  • Synonyms
    LEP1
  • Links
    NCBI Gene ID: 353131
    neXtProt AC: NX_Q5T7P2
    UniProt: Q5T7P2

  • Chr Location
    1q21.3; chr1:152827473-152828097 (+)  GRCh38
  • Human Ortholog
    LCE1B, late cornified envelope 1B
  • Synonyms
    LEP2, SPRL2A
  • Links
    NCBI Gene ID: 353132
    neXtProt AC: NX_Q5T7P3
    UniProt: Q5T7P3

  • Chr Location
    1q21.3; chr1:152811971-152813108 (+)  GRCh38
  • Human Ortholog
    LCE1C, late cornified envelope 1C
  • Synonyms
    LEP3
  • Links
    NCBI Gene ID: 353133
    neXtProt AC: NX_Q5T751
    UniProt: Q5T751

  • Chr Location
    1q21.3; chr1:152804832-152806651 (-)  GRCh38
  • Human Ortholog
    LCE1E, late cornified envelope 1E
  • Synonyms
    LEP5
  • Links
    NCBI Gene ID: 353135
    neXtProt AC: NX_Q5T753
    UniProt: Q5T753

  • Chr Location
    1q21.3; chr1:152786214-152788426 (+)  GRCh38
  • Human Ortholog
    LCE1F, late cornified envelope 1F
  • Synonyms
    LEP6
  • Links
    NCBI Gene ID: 353137
    neXtProt AC: NX_Q5T754
    UniProt: Q5T754

  • Chr Location
    1q21.3; chr1:152775140-152777024 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    12 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    2
Molecular Function

Biological Process

Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    709
  • Tissues
    3
  • cDNA Data
    7
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 67828 NCBI Gene Model | MGI Sequence Detail 1655 C57BL/6J ±  kb
    transcript NM_026394 RefSeq | MGI Sequence Detail 768 C57BL/6  
    polypeptide NP_080670 RefSeq | MGI Sequence Detail 147 C57BL/6  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      2 Sequences
    Molecular
    Reagents
    less
    • All nucleic 7
      cDNA 7

      Microarray probesets 2
    References
    more
    • Summaries
      All 28
      Developmental Gene Expression 1
      Diseases 1
      Gene Ontology 2
      Phenotypes 12
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/16/2024
    MGI 6.23     		The Jackson Laboratory