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6530411M01Rik Gene Detail
Summary
  • Symbol
    6530411M01Rik
  • Name
    RIKEN cDNA 6530411M01 gene
Location &
Maps
more
  • Sequence Map
    Chr17:9366551-9386854 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 5.97 cM, cytoband A1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    539 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915041
 lncRNA gene Chr17:9366537-9474678 (-)
129S1/SvImJ ENSMUSG00200034731
 lncRNA gene Chr17:5594800-5614894 (-)
A/J ENSMUSG00195023624
 lncRNA gene Chr17:5810662-5830780 (-)
AKR/J ENSMUSG00220029538
 lncRNA gene Chr17:5872258-5892359 (-)
BALB/cJ ENSMUSG00180026080
 lncRNA gene Chr17:5456829-5476945 (-)
C3H/HeJ ENSMUSG00175034912
 lncRNA gene Chr17:5601050-5621168 (-)
C57BL/6NJ ENSMUSG00215031125
 lncRNA gene Chr17:5609250-5629368 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0005171
 lincRNA gene Chr17:7718573-7738040 (+)
CAST/EiJ ENSTCUG00005023044
 lncRNA gene Chr17:5846679-5866089 (-)
CBA/J ENSMUSG00210039593
 lncRNA gene Chr17:5267851-5287969 (-)
DBA/2J ENSMUSG00185024712
 lncRNA gene Chr17:6360527-6380646 (-)
FVB/NJ ENSMUSG00205009557
 lncRNA gene Chr17:5673317-5693437 (-)
JF1/MsJ ENSUMUG00000040388
 lncRNA gene Chr17:5954554-5973852 (-)
LP/J ENSMUSG00230034427
 lncRNA gene Chr17:7792377-7812478 (-)
NOD/ShiLtJ ENSMUSG00190036679
 lncRNA gene Chr17:5806223-5826339 (-)
NZO/HlLtJ ENSMUSG00225029206
 lncRNA gene Chr17:9712671-9732772 (-)
PWK/PhJ ENSLUMG00010020088
 lncRNA gene Chr17:5775736-5795073 (-)
SPRET/EiJ ENSMSPG00010038295
 lncRNA gene Chr17:7875291-7895332 (+)
WSB/EiJ ENSIUOG00005014338
 lncRNA gene Chr17:5660938-5681009 (-)



Homology
less
Human Diseases
less
  • References
    6 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    379 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    5
Sequences &
Gene Models
less
  • All Sequences
    36
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 67791 NCBI Gene Model | MGI Sequence Detail 20304 C57BL/6J ±  kb
transcript NR_027881 RefSeq | MGI Sequence Detail 1219 C57BL/6  
polypeptide Q8C5I9 UniProt | EBI | MGI Sequence Detail 84 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 2
References
more
  • Summaries
    All 392
    Diseases 6
    Phenotypes 379
  • Earliest
    J:7073 Washburn LL, et al., Sex reversal in XY mice caused by dominant mutation on chromosome 17. Nature. 1983 May 26;303(5915):338-40
  • Latest
    J:391449 Thibodeau J, et al., Loss of cystathionine-beta-synthase contributes to elevated OXPHOS, a vulnerability in Ara-C-resistant Myeloid Leukemia in Down syndrome. Biochem Pharmacol. 2026 Feb 13;247:117815
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/01/2026
MGI 6.24 		The Jackson Laboratory