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6530411M01Rik Gene Detail
Summary
  • Symbol
    6530411M01Rik
  • Name
    RIKEN cDNA 6530411M01 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1915041
    NCBI Gene: 67791
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr17:9366551-9386668 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 5.97 cM, cytoband A1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    162 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915041
 lncRNA gene Chr17:9366551-9386854 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005689
 lincRNA gene Chr17:6661847-6684380 (-)
A/J MGP_AJ_G0005676
 lincRNA gene Chr17:6654468-6674535 (-)
AKR/J MGP_AKRJ_G0005655
 lincRNA gene Chr17:6355963-6376107 (-)
BALB/cJ MGP_BALBcJ_G0005656
 lincRNA gene Chr17:6442042-6463877 (-)
C3H/HeJ MGP_C3HHeJ_G0005603
 lincRNA gene Chr17:6630757-6653340 (-)
C57BL/6NJ MGP_C57BL6NJ_G0005813
 lincRNA gene Chr17:6960303-6984317 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0005171
 lincRNA gene Chr17:7718573-7738040 (+)
CAST/EiJ MGP_CASTEiJ_G0005545
 lincRNA gene Chr17:6639788-6661977 (-)
CBA/J MGP_CBAJ_G0005591
 lincRNA gene Chr17:7229634-7252705 (-)
DBA/2J MGP_DBA2J_G0005609
 lincRNA gene Chr17:6308663-6328952 (-)
FVB/NJ MGP_FVBNJ_G0005635
 lincRNA gene Chr17:6240040-6260108 (-)
LP/J MGP_LPJ_G0005691
 lincRNA gene Chr17:6488860-6510324 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0005620
 lincRNA gene Chr17:6924422-6946955 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0005814
 lincRNA gene Chr17:6657908-6678966 (-)
PWK/PhJ MGP_PWKPhJ_G0005492
 lincRNA gene Chr17:5967814-5987720 (-)
SPRET/EiJ MGP_SPRETEiJ_G0005410
 lincRNA gene Chr17:6006678-6026415 (-)
WSB/EiJ MGP_WSBEiJ_G0005597
 lincRNA gene Chr17:6950991-6972501 (-)



Homology
less
Human Diseases
less
  • References
    6 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    337 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    5
Sequences &
Gene Models
less
  • All Sequences
    28
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000097049 Ensembl Gene Model | MGI Sequence Detail 20118 C57BL/6J ±  kb
transcript ENSMUST00000181618 Ensembl | MGI Sequence Detail 1033 Not Applicable  
polypeptide Q8C5I9 UniProt | EBI | MGI Sequence Detail 84 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 2
References
more
  • Summaries
    All 349
    Diseases 6
    Phenotypes 337
  • Earliest
    J:7073 Washburn LL, et al., Sex reversal in XY mice caused by dominant mutation on chromosome 17. Nature. 1983 May 26;303(5915):338-40
  • Latest
    J:346702 Colombi I, et al., Heterogeneous subpopulations of GABA(A)R-responding neurons coexist across neuronal network scales and developmental stages in health and disease. iScience. 2024 Apr 19;27(4):109438
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory