4930583K01Rik Gene Detail

Summary

• Symbol
  4930583K01Rik
• Name
  RIKEN cDNA 4930583K01 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1914995
  NCBI Gene: 67745
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:117843130-117844774 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 63.44 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  69 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914995	lncRNA gene	Chr7:117842942-117844782 (+)
129S1/SvImJ	ENSMUSG00200022734	lncRNA gene	Chr7:104360535-104362229 (+)
A/J	ENSMUSG00195041481	lncRNA gene	Chr7:108901431-108903136 (+)
AKR/J	ENSMUSG00220027272	lncRNA gene	Chr7:102337517-102339203 (+)
BALB/cJ	ENSMUSG00180033310	lncRNA gene	Chr7:105564725-105566430 (+)
C3H/HeJ	ENSMUSG00175026927	lncRNA gene	Chr7:106272938-106274632 (+)
C57BL/6NJ	ENSMUSG00215040981	lncRNA gene	Chr7:105508824-105510510 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013810	unclassified non-coding RNA gene	Chr7:120440225-120441929 (+)
CAST/EiJ	ENSTCUG00005045028	lncRNA gene	Chr7:108854808-108856505 (+)
CBA/J	ENSMUSG00210024930	lncRNA gene	Chr7:105996399-105998093 (+)
DBA/2J	ENSMUSG00185022258	lncRNA gene	Chr7:110347137-110348831 (+)
FVB/NJ	ENSMUSG00205049451	lncRNA gene	Chr7:105971966-105973652 (+)
JF1/MsJ	ENSUMUG00000052007	lncRNA gene	Chr7:115408701-115410395 (+)
LP/J	ENSMUSG00230038567	lncRNA gene	Chr7:116446496-116448190 (+)
NOD/ShiLtJ	ENSMUSG00190030133	lncRNA gene	Chr7:106188595-106190281 (+)
NZO/HlLtJ	ENSMUSG00225040500	lncRNA gene	Chr7:114710731-114712435 (+)
PWK/PhJ	ENSLUMG00010013591	lncRNA gene	Chr7:104544210-104545907 (+)
SPRET/EiJ	ENSMSPG00010009202	lncRNA gene	Chr7:105756779-105758465 (+)
WSB/EiJ	ENSIUOG00005012185	lncRNA gene	Chr7:106863918-106865619 (+)

Homology

• Gene Tree
  4930583K01Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000055159 (Evidence)
• NCBI Gene
  67745

Representative Sequences			Length	Strain/Species
genomic	67745	NCBI Gene Model | MGI Sequence Detail	1645	C57BL/6J
transcript	NR_027879	RefSeq | MGI Sequence Detail	883	C57BL/6
polypeptide	Q8CER1	UniProt | EBI | MGI Sequence Detail	101	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 14

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 4930583K01Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68712	Chr7:117843083-117843094 (+)	-41 bp