4930583K01Rik Gene Detail

Summary

• Symbol
  4930583K01Rik
• Name
  RIKEN cDNA 4930583K01 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1914995
  NCBI Gene: 67745
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:117843130-117844774 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 63.44 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  13 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914995	lncRNA gene	Chr7:117843088-117844774 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015687	unclassified non-coding RNA gene	Chr7:122069538-122071224 (+)
A/J	MGP_AJ_G0015665	unclassified non-coding RNA gene	Chr7:118978548-118980244 (+)
AKR/J	MGP_AKRJ_G0015628	unclassified non-coding RNA gene	Chr7:122014632-122016318 (+)
BALB/cJ	MGP_BALBcJ_G0015626	unclassified non-coding RNA gene	Chr7:118708698-118710395 (+)
C3H/HeJ	MGP_C3HHeJ_G0015448	unclassified non-coding RNA gene	Chr7:121920228-121921922 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016081	unclassified non-coding RNA gene	Chr7:126940859-126942545 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013810	unclassified non-coding RNA gene	Chr7:120440225-120441929 (+)
CAST/EiJ	MGP_CASTEiJ_G0015003	unclassified non-coding RNA gene	Chr7:113655666-113657364 (+)
CBA/J	MGP_CBAJ_G0015429	unclassified non-coding RNA gene	Chr7:131183157-131184842 (+)
DBA/2J	MGP_DBA2J_G0015525	unclassified non-coding RNA gene	Chr7:117024314-117026007 (+)
FVB/NJ	MGP_FVBNJ_G0015531	unclassified non-coding RNA gene	Chr7:116863717-116865403 (+)
LP/J	MGP_LPJ_G0015605	unclassified non-coding RNA gene	Chr7:123547398-123549091 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015553	unclassified non-coding RNA gene	Chr7:132701438-132703124 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016123	unclassified non-coding RNA gene	Chr7:121002283-121003986 (+)
PWK/PhJ	MGP_PWKPhJ_G0014785	unclassified non-coding RNA gene	Chr7:109916276-109918026 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014574	unclassified non-coding RNA gene	Chr7:107748243-107749929 (+)
WSB/EiJ	MGP_WSBEiJ_G0015108	unclassified non-coding RNA gene	Chr7:121895555-121897245 (+)

Homology

• Gene Tree
  4930583K01Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000055159 (Evidence)
• NCBI Gene
  67745

Representative Sequences			Length	Strain/Species
genomic	67745	NCBI Gene Model | MGI Sequence Detail	1645	C57BL/6J
transcript	NR_027879	RefSeq | MGI Sequence Detail	883	C57BL/6
polypeptide	Q8CER1	UniProt | EBI | MGI Sequence Detail	101	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 4930583K01Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68712	Chr7:117843083-117843094 (+)	-41 bp