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Ttc39d Gene Detail
Summary
  • Symbol
    Ttc39d
  • Name
    tetratricopeptide repeat domain 39D
  • Synonyms
    4930560E09Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914987
    NCBI Gene: 67737
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr17:80523343-80525365 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 50.63 cM, cytoband E3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    10 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914987
 protein coding gene Chr17:80514889-80525365 (+)
129S1/SvImJ MGP_129S1SvImJ_G0024058
 protein coding gene Chr17:83114887-83125218 (+)
A/J MGP_AJ_G0024015
 protein coding gene Chr17:80558211-80568506 (+)
AKR/J MGP_AKRJ_G0023984
 protein coding gene Chr17:81820441-81830858 (+)
BALB/cJ MGP_BALBcJ_G0024017
 protein coding gene Chr17:80437704-80449773 (+)
C3H/HeJ MGP_C3HHeJ_G0023781
 protein coding gene Chr17:82698061-82709580 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024461
 protein coding gene Chr17:86147472-86159649 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021903
 protein coding gene Chr17:75936444-75945060 (+)
CAST/EiJ MGP_CASTEiJ_G0023261
 protein coding gene Chr17:83370417-83383588 (+)
CBA/J MGP_CBAJ_G0023755
 protein coding gene Chr17:89727321-89739966 (+)
DBA/2J MGP_DBA2J_G0023884
 protein coding gene Chr17:79069985-79080544 (+)
FVB/NJ MGP_FVBNJ_G0023850
 protein coding gene Chr17:78569859-78580713 (+)
LP/J MGP_LPJ_G0023967
 protein coding gene Chr17:83956054-83968465 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0023878
 protein coding gene Chr17:89780355-89793640 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024506
 protein coding gene Chr17:82302780-82313223 (+)
PWK/PhJ MGP_PWKPhJ_G0023007
 protein coding gene Chr17:78606507-78617024 (+)
SPRET/EiJ MGP_SPRETEiJ_G0022818
 protein coding gene Chr17:79076277-79088530 (+)
WSB/EiJ MGP_WSBEiJ_G0023328
 protein coding gene Chr17:83122280-83132533 (+)



Homology
more
  • Human Ortholog
    TTC39DP, tetratricopeptide repeat domain 39D, pseudogene
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TTC39DP, tetratricopeptide repeat domain 39D, pseudogene
  • Links
    NCBI Gene ID: 646640

  • Chr Location
    2p22.1; chr2:38763534-38765221 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
DNA-templated transcription
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    6
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67737 NCBI Gene Model | MGI Sequence Detail 2023 C57BL/6J ±  kb
transcript NM_026351 RefSeq | MGI Sequence Detail 2027 Not Specified  
polypeptide NP_080627 RefSeq | MGI Sequence Detail 604 Not Specified  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR019412 Inclusion body clearance protein Iml2/Tetratricopeptide repeat protein 39
    IPR011990 Tetratricopeptide-like helical domain superfamily
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 2
References
more
  • Summaries
    All 18
    Gene Ontology 1
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/21/2023
MGI 6.22 		The Jackson Laboratory