1700020N01Rik Gene Detail

Summary

• Symbol
  1700020N01Rik
• Name
  RIKEN cDNA 1700020N01 gene

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:1914942
  NCBI Gene: 67692
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr10:21469044-21498274 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 9.79 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2001 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914942	protein coding gene	Chr10:21468047-21498276 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0017062	protein coding gene	Chr10:19404088-19434588 (+)
A/J	MGP_AJ_G0017040	protein coding gene	Chr10:18669919-18699829 (+)
AKR/J	MGP_AKRJ_G0017004	protein coding gene	Chr10:19002658-19031624 (+)
BALB/cJ	MGP_BALBcJ_G0016998	protein coding gene	Chr10:18727137-18756874 (+)
C3H/HeJ	MGP_C3HHeJ_G0016823	protein coding gene	Chr10:19324481-19353927 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0017460	protein coding gene	Chr10:19897806-19927065 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0015165	protein coding gene	Chr10:17629850-17659368 (+)
CAST/EiJ	MGP_CASTEiJ_G0016405	protein coding gene	Chr10:19240147-19272134 (+)
CBA/J	MGP_CBAJ_G0016795	protein coding gene	Chr10:20826197-20857599 (+)
DBA/2J	MGP_DBA2J_G0016903	protein coding gene	Chr10:18538973-18568387 (+)
FVB/NJ	MGP_FVBNJ_G0016898	protein coding gene	Chr10:18275570-18305312 (+)
LP/J	MGP_LPJ_G0016978	protein coding gene	Chr10:19201951-19233243 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0016928	protein coding gene	Chr10:20999286-21028604 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0017498	protein coding gene	Chr10:18987762-19016865 (+)
PWK/PhJ	MGP_PWKPhJ_G0016190	protein coding gene	Chr10:18446176-18477865 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0015973	protein coding gene	Chr10:19153210-19182329 (+)
WSB/EiJ	MGP_WSBEiJ_G0016467	protein coding gene	Chr10:19076053-19105291 (+)

Homology

• MGI Vertebrate Homology
  1700020N01Rik stringent orthology
  1 mouse;1 rat
  
• Gene Tree
  1700020N01Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Gene trapped
  1
• Targeted
  3
• Genomic Mutations
  1 involving 1700020N01Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  13 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  11

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000050844 (Evidence)
• NCBI Gene
  67692

Representative Sequences			Length	Strain/Species
genomic	67692	NCBI Gene Model | MGI Sequence Detail	29231	C57BL/6J
transcript	NR_027968	RefSeq | MGI Sequence Detail	1061	Not Specified
polypeptide	Q8CF20	UniProt | EBI | MGI Sequence Detail	87	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR036051 KRAB domain superfamily
  IPR001909 Krueppel-associated box
  IPR050169 Krueppel C2H2-type zinc-finger

Molecular
Reagents

• All nucleic 11

  cDNA 11

  
  

  Microarray probesets 4

References

• Summaries
  All 25

  Phenotypes 10
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

TSS for 1700020N01Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92640	Chr10:21468034-21468050 (+)	-1,002 bp
Tssr92641	Chr10:21469011-21469021 (+)	-28 bp
Tssr92642	Chr10:21469025-21469036 (+)	-13 bp
Tssr92643	Chr10:21469042-21469045 (+)	0 bp
Tssr92644	Chr10:21469050-21469080 (+)	21 bp
Tssr92645	Chr10:21469085-21469086 (+)	42 bp
Tssr92646	Chr10:21469090-21469096 (+)	49 bp